y
Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01021726001 |
Family | AA7 |
Protein Properties | Length: 548 Molecular Weight: 62045.8 Isoelectric Point: 7.3949 |
Chromosome | Chromosome/Scaffold: 10 Start: 10104903 End: 10113010 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 68 | 505 | 0 |
LRFMSSTTPKPSFIVASSHVSHVQATIICCKIHGLQLRIRSGGHDYDGLSYVSDVPFVILDMFNLREVSVDIENEWAWVQSGATMGELYYRIAVKSNLYG FPAGVCPTVGVGGHFSGGGYGNMMRKYGLSVDNVLDAQIVDANGRILDRESMGEDLFWAIRGGGGASFGVIVAWKIRLVPVPETVTVFRVERTLEQGAID LLHQWQYVADKINEDLFIRVVILPVIRKDHKTIKAKFVSLFLGNSEKLLALMSESFPELGINGNNCIEMSWVESIVYWSNYYLKKKSDYVQASISKADLK GILNTMMELQKPALTFNPYGGRMSEISESETPFPHRAGNIYKIQYSVTWKEESMEAADHNLNMIRRIYDYMTPYVSNSPRGSYLNYRDIDLGVNQNGNVS YEEASIWGTKYFKDNFDRLVQVKSRVDPDNFFRYEQSI |
Full Sequence |
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Protein Sequence Length: 548 Download |
MGTSRFAILS VLSALVLHFS LTMSDPVHDS FLQCLSHLSA PSPPISGVFY TPTNSSYAYV 60 LQSYIQNLRF MSSTTPKPSF IVASSHVSHV QATIICCKIH GLQLRIRSGG HDYDGLSYVS 120 DVPFVILDMF NLREVSVDIE NEWAWVQSGA TMGELYYRIA VKSNLYGFPA GVCPTVGVGG 180 HFSGGGYGNM MRKYGLSVDN VLDAQIVDAN GRILDRESMG EDLFWAIRGG GGASFGVIVA 240 WKIRLVPVPE TVTVFRVERT LEQGAIDLLH QWQYVADKIN EDLFIRVVIL PVIRKDHKTI 300 KAKFVSLFLG NSEKLLALMS ESFPELGING NNCIEMSWVE SIVYWSNYYL KKKSDYVQAS 360 ISKADLKGIL NTMMELQKPA LTFNPYGGRM SEISESETPF PHRAGNIYKI QYSVTWKEES 420 MEAADHNLNM IRRIYDYMTP YVSNSPRGSY LNYRDIDLGV NQNGNVSYEE ASIWGTKYFK 480 DNFDRLVQVK SRVDPDNFFR YEQSIPSVTN RNYVMADPIF SSLRTRRKLN HKFTERDVLY 540 SKAEYWW* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR00387 | glcD | 0.0003 | 125 | 254 | 139 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
pfam08031 | BBE | 2.0e-18 | 449 | 506 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
COG0277 | GlcD | 1.0e-19 | 90 | 500 | 451 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 2.0e-23 | 78 | 215 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN72775.1 | 0 | 1 | 517 | 1 | 509 | hypothetical protein [Vitis vinifera] |
EMBL | CBI31067.1 | 0 | 1 | 547 | 1 | 547 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268682.1 | 0 | 1 | 517 | 1 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300580.1 | 0 | 25 | 508 | 5 | 506 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523156.1 | 0 | 30 | 508 | 11 | 507 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 27 | 508 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 27 | 508 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3vte_A | 0 | 29 | 508 | 5 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_B | 0 | 29 | 511 | 9 | 499 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_A | 0 | 29 | 511 | 9 | 499 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |