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Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_023945m |
Family | AA7 |
Protein Properties | Length: 543 Molecular Weight: 60262.9 Isoelectric Point: 9.1316 |
Chromosome | Chromosome/Scaffold: 03386 Start: 19939 End: 21567 |
Description | FAD-binding Berberine family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 66 | 528 | 0 |
NLRYSTPSTPKPLAVVAAKHESHVQAAVLCCKNLGLQIRIRSGGHDYDGLSYVSQVPFVVLDMSNLRSIDIDIKDETAWAQAGASLGELYYKIAEKSNVH GFPAGVCPTLGLGGHISGGGYGNMMRKYGLSIDNVVDAQIVDVKGRILDRKSMGEDLFWAIRGGGAASFGAVLSWKIKLVAVSERVTVFQVVRSIDQQGG TDLVLKWQQVADKLDQDLFIRLVLQPANGAQQGKKTINAIFVGMFLGDAERLLPLMESNFPELGLQKNDTTEMRWIESVVFWVGMPKGTPIEALLNRTYS KAMLSYLKRKSDYVKQPISKKDLESLWKLMTEIGEVGMTWNPYGGKMNEISETETAFPHRAGNLYKIQYSVNWKEEGSEKANHYLNLTRTLYEAMTPYVS KNPRGAFLNYRDIEIGTIGSSGNGTFQEASVYGRSYFNGNFDRLVSVKTAVDPENFFRYEQSI |
Full Sequence |
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Protein Sequence Length: 543 Download |
MKLLALSLFS LLFISSVSVS RSKKINNEDF LQCLYNKSQP SNPISEAIYT PSNSSFTDVL 60 ESYVRNLRYS TPSTPKPLAV VAAKHESHVQ AAVLCCKNLG LQIRIRSGGH DYDGLSYVSQ 120 VPFVVLDMSN LRSIDIDIKD ETAWAQAGAS LGELYYKIAE KSNVHGFPAG VCPTLGLGGH 180 ISGGGYGNMM RKYGLSIDNV VDAQIVDVKG RILDRKSMGE DLFWAIRGGG AASFGAVLSW 240 KIKLVAVSER VTVFQVVRSI DQQGGTDLVL KWQQVADKLD QDLFIRLVLQ PANGAQQGKK 300 TINAIFVGMF LGDAERLLPL MESNFPELGL QKNDTTEMRW IESVVFWVGM PKGTPIEALL 360 NRTYSKAMLS YLKRKSDYVK QPISKKDLES LWKLMTEIGE VGMTWNPYGG KMNEISETET 420 AFPHRAGNLY KIQYSVNWKE EGSEKANHYL NLTRTLYEAM TPYVSKNPRG AFLNYRDIEI 480 GTIGSSGNGT FQEASVYGRS YFNGNFDRLV SVKTAVDPEN FFRYEQSIPI QSRSSKVKVG 540 SL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam08031 | BBE | 9.0e-15 | 471 | 529 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
COG0277 | GlcD | 3.0e-16 | 59 | 523 | 490 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 2.0e-23 | 77 | 214 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN80091.1 | 0 | 30 | 529 | 32 | 527 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002269462.1 | 0 | 30 | 529 | 32 | 527 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317086.1 | 0 | 8 | 534 | 7 | 529 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523152.1 | 0 | 26 | 529 | 8 | 506 | Reticuline oxidase precursor, putative [Ricinus communis] |
RefSeq | XP_002523155.1 | 0 | 1 | 531 | 1 | 524 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 28 | 529 | 5 | 511 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 27 | 529 | 10 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 27 | 529 | 10 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 28 | 529 | 9 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 28 | 529 | 9 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |