y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra013478 |
Family | AA7 |
Protein Properties | Length: 523 Molecular Weight: 58934 Isoelectric Point: 9.6931 |
Chromosome | Chromosome/Scaffold: 01 Start: 5891610 End: 5893178 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 68 | 518 | 0 |
FTSLKPILTLKPKSESEIKKAILCSKKLGVQVRTLSGGHDYEGLSYLSLTPFIIIDLVNLRTITINLTEETAWIQSGATLGELYYKIAKTSKVHAFAAGI CPSVGVGGHISGGGFGTIMRKHGLASDNVVDARLMDVNGRILDRRTMGEDLFWALRGGGAASFGVVLSWKVKLARVPEKVTCFISQHPMGASMNKLVHRW QSIGAELDQNLFIRVIIDNSVEGGQRRVKTTFQALFLGGVDKLIPLMNQKFPEIGLRAQDCSEMSWIESIMFFNWKSGQPLETMLNRDLRYEDLYFKAKS DFVQKPVPENVFEEVTKRFLEKETPLMILEPLGGKISEVSESESPYPHRRGNIYNIQYMVKWRVNTVEEMNRHVTWMIMLYDYMTPYVSSSPRGAYLNYR DLDLGNNTGSKTSFEDARVWGEKYYRGNFKKLGLVKGKIDPTNFFRNEQSI |
Full Sequence |
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Protein Sequence Length: 523 Download |
MRDLALCLFV FILAKHVSSV PTKEQFQSCL STISRNPNNL TKHTSDSRLY TASLKTSSPS 60 SNFLNLNFTS LKPILTLKPK SESEIKKAIL CSKKLGVQVR TLSGGHDYEG LSYLSLTPFI 120 IIDLVNLRTI TINLTEETAW IQSGATLGEL YYKIAKTSKV HAFAAGICPS VGVGGHISGG 180 GFGTIMRKHG LASDNVVDAR LMDVNGRILD RRTMGEDLFW ALRGGGAASF GVVLSWKVKL 240 ARVPEKVTCF ISQHPMGASM NKLVHRWQSI GAELDQNLFI RVIIDNSVEG GQRRVKTTFQ 300 ALFLGGVDKL IPLMNQKFPE IGLRAQDCSE MSWIESIMFF NWKSGQPLET MLNRDLRYED 360 LYFKAKSDFV QKPVPENVFE EVTKRFLEKE TPLMILEPLG GKISEVSESE SPYPHRRGNI 420 YNIQYMVKWR VNTVEEMNRH VTWMIMLYDY MTPYVSSSPR GAYLNYRDLD LGNNTGSKTS 480 FEDARVWGEK YYRGNFKKLG LVKGKIDPTN FFRNEQSIPP LL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 4.0e-10 | 73 | 245 | 181 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 4.0e-17 | 73 | 210 | 141 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam08031 | BBE | 1.0e-17 | 462 | 519 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK56258.1 | 0 | 14 | 522 | 17 | 530 | AF367269_1 AT4g20860/T13K14_20 [Arabidopsis thaliana] |
GenBank | AAN60251.1 | 0 | 1 | 444 | 1 | 450 | unknown [Arabidopsis thaliana] |
GenBank | ABC41950.1 | 0 | 5 | 521 | 7 | 523 | FAD-linked oxidoreductase 1 [Glycine max] |
RefSeq | NP_193818.1 | 0 | 14 | 522 | 17 | 530 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
RefSeq | NP_199249.1 | 0 | 1 | 522 | 4 | 531 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 23 | 521 | 4 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 40 | 522 | 17 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 40 | 522 | 17 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 22 | 522 | 7 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 22 | 522 | 7 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |