y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_066_00049.1 |
Family | AA7 |
Protein Properties | Length: 477 Molecular Weight: 53367.1 Isoelectric Point: 9.3385 |
Chromosome | Chromosome/Scaffold: 66 Start: 1062061 End: 1063529 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 38 | 474 | 0 |
TTPKPQFIITPTQESHIQAAVICSKKHNYLIRVRSGGHDYEGLSYISYRPFIIIDLFNFQEINVDIKDNTAWVRLVLPTHGFAAGVCPPMGVGGHIGGGG IGFLMRKYGLAADNIVDACFIDVNGKLLNRKSMGEDLFWAIRGGGGASFGVIVAWKIQLVPVPAIVTVFNVQRTLEQGATNLFYKWQNSAHKFHENLLIR TIIQAVNGENGRTIQVVFQSVFQGTVKELLPLMQKSFPELGLEAKDCTEMSWINSTLNVAGLSGQPLEVLLRRSQQSKNYFKNKSDFVKNAITPTELKSL WKFMLEEADNSSPVLINEPLGGKMAKISESAIPFPHRAGNLYNIQYVVTWLDGSATARSLETSRRLYEYMTPYVSKSPRAAYVNYKDLDLGMNKDMNTSF KEASVWGEKYFKANFVRLSYVKKKVDPENFFWNEQSI |
Full Sequence |
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Protein Sequence Length: 477 Download |
MNSDTSSSIS SIVYSPTNSS YTSILEFSIQ NFRFISSTTP KPQFIITPTQ ESHIQAAVIC 60 SKKHNYLIRV RSGGHDYEGL SYISYRPFII IDLFNFQEIN VDIKDNTAWV RLVLPTHGFA 120 AGVCPPMGVG GHIGGGGIGF LMRKYGLAAD NIVDACFIDV NGKLLNRKSM GEDLFWAIRG 180 GGGASFGVIV AWKIQLVPVP AIVTVFNVQR TLEQGATNLF YKWQNSAHKF HENLLIRTII 240 QAVNGENGRT IQVVFQSVFQ GTVKELLPLM QKSFPELGLE AKDCTEMSWI NSTLNVAGLS 300 GQPLEVLLRR SQQSKNYFKN KSDFVKNAIT PTELKSLWKF MLEEADNSSP VLINEPLGGK 360 MAKISESAIP FPHRAGNLYN IQYVVTWLDG SATARSLETS RRLYEYMTPY VSKSPRAAYV 420 NYKDLDLGMN KDMNTSFKEA SVWGEKYFKA NFVRLSYVKK KVDPENFFWN EQSIPT* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 4.0e-11 | 42 | 476 | 464 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 4.0e-13 | 42 | 166 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam08031 | BBE | 1.0e-16 | 418 | 475 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63059.1 | 0 | 1 | 475 | 39 | 529 | hypothetical protein [Vitis vinifera] |
EMBL | CAN81654.1 | 0 | 1 | 475 | 36 | 525 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268361.1 | 0 | 1 | 475 | 36 | 525 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277294.1 | 0 | 1 | 475 | 39 | 529 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277310.1 | 0 | 1 | 475 | 39 | 529 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 12 | 475 | 24 | 511 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 13 | 475 | 26 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 13 | 475 | 26 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 12 | 475 | 23 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 12 | 475 | 23 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777438 | 477 | 22 | 475 | 0 |
DC894588 | 338 | 148 | 475 | 0 |
GR924372 | 295 | 141 | 431 | 0 |
EC936189 | 274 | 116 | 387 | 0 |
HO798639 | 318 | 22 | 319 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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