y
Basic Information | |
---|---|
Species | Fragaria vesca |
Cazyme ID | mrna23782.1-v1.0-hybrid |
Family | GT31 |
Protein Properties | Length: 863 Molecular Weight: 97823.3 Isoelectric Point: 7.7678 |
Chromosome | Chromosome/Scaffold: 6 Start: 34437129 End: 34454336 |
Description | Galactosyltransferase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT31 | 467 | 663 | 0 |
KRRDSVRATWMPQGEKRKRLEEEKGIIIRFVIGHSATSGGILDRAVEAEDRKHGDLLRLDHVEGYLELSAKTKIYFATAVATWDADFYVKVDDDVHVNIA TLGETLVRHRKKSRLYIGCMKSGPVLAQKGVRYHEPEYWKFGEPGNKYFRHATGQLYAISKDLATYISINQHVLHKYANEDVSLGAWFIGLDVEHID |
Full Sequence |
---|
Protein Sequence Length: 863 Download |
MKIYFPEAGE WREFHAPLPQ MGRLYSYHEH AGIAYPGKLY WLVQGFIMEL DALALDISTS 60 SEDVAAKYCR FIEIVLDKQF DRRIMCLGLC QGSMRAMSID SDHIRSWELR SGDDDDHHHE 120 QWGKWRFVHR ASASLLISEK IMSTYNGYVE VDNASENVLL SLDSLDEDTV YMLRKSGEVC 180 RYNVVTGACD YVPLGGPYSI FGVRMDPITH PWWPTPLPRQ VDLHNKTTIN RAYAHWIKLG 240 SCSPTEVRFK GLSASLKVLV KNREATHSCS DSLPSLNLVP KALAFKRCHA FIFLCLLLLL 300 LLGSLFVFSI LVTVLFIWEY SGRVGIGKLE ENLGRRRRRC LGKAEETLLL LEMMWSVPES 360 KGITRRTTLE EEKLKLVSEG CHPKALHQKE VKRETKDIIG EVFKTHNAIQ TLDKTISNLE 420 MELAAARATQ ESIRSGAPSS GDSKTDSSGK RRYLMVVGIN TAFSSRKRRD SVRATWMPQG 480 EKRKRLEEEK GIIIRFVIGH SATSGGILDR AVEAEDRKHG DLLRLDHVEG YLELSAKTKI 540 YFATAVATWD ADFYVKVDDD VHVNIATLGE TLVRHRKKSR LYIGCMKSGP VLAQKGVRYH 600 EPEYWKFGEP GNKYFRHATG QLYAISKDLA TYISINQHVL HKYANEDVSL GAWFIGLDVE 660 HIDDRRLCCG TPPDCEWKAQ AGNVCVASFD WSCSGICRSA ERIKEVHRRC GEENYKLKDS 720 IIDLEQLNPN SLLVAMLGFS RNVVVKKSYK SEVPLEKREA EAARIREQHP DRVPVIVEKA 780 EKSDVPDIEK NKYLVPADIT VGQLVFVIRK KIKLDADQAI FVFVKDILPP TAALMSSIYE 840 ENKDEDGFLY MTYSGESTFG TC* 900 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13334 | DUF4094 | 2.0e-23 | 354 | 429 | 76 | + Domain of unknown function (DUF4094). This domain is found in plant proteins that often carry a galactosyltransferase domain, pfam01762, at their C-terminus. | ||
pfam02991 | Atg8 | 5.0e-51 | 768 | 860 | 93 | + Autophagy protein Atg8 ubiquitin like. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19. | ||
pfam01762 | Galactosyl_T | 5.0e-53 | 467 | 665 | 205 | + Galactosyltransferase. This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2. | ||
cd01611 | GABARAP | 3.0e-55 | 749 | 860 | 112 | + Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. | ||
PLN03193 | PLN03193 | 0 | 340 | 712 | 374 | + beta-1,3-galactosyltransferase; Provisional |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0006486 | protein glycosylation |
GO:0008378 | galactosyltransferase activity |
GO:0016020 | membrane |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vh4_B | 0 | 745 | 860 | 4 | 119 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3vh3_B | 0 | 745 | 860 | 4 | 119 | B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex |
PDB | 2kwc_A | 0 | 745 | 860 | 1 | 116 | A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 |
PDB | 2li5_A | 0 | 745 | 860 | 2 | 117 | B Chain B, Nmr Structure Of Atg8-Atg7c30 Complex |
PDB | 3rui_B | 0 | 745 | 860 | 3 | 118 | B Chain B, Crystal Structure Of Atg7c-Atg8 Complex |