| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10020209m |
| Family | GH51 |
| Protein Properties | Length: 678 Molecular Weight: 74691 Isoelectric Point: 5.2093 |
| Chromosome | Chromosome/Scaffold: 13 Start: 5985295 End: 5989922 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH51 | 227 | 658 | 0 |
| GSIWIDQVSAMPVDTYKGHGFRNDLFQMMVDIKPRFIRFPGGCFVEGEWLSNAFRWKETVGPWEERPGHFGDVWKYWTDDGLGHFEFFQLAEDIGAAPIW VFNNGISHNDEVETASVMPFVQEALDGIEFARGDANSTWGSVRAAMGRQEPFELKYVAIGNEDCGKTYYKGNYIVFYNAIKKAYPDIKIISNCDGSSRPL DHPADYYDYHIYTSASSLFSMYHQFDRTSRNGPKAFVSEYAVTGKDAGTGSLLAALAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSH LYGTPSYWVQRFFAESSGSTLLASTLKGNSSSLVASAITWQNNGKDYIRIKAVNFGASSVNLKVLVTGLDPNVMKVSGSKKTILTSTNVMDENSFTQPEK VVPHESLLEMAEEDLTVILPPHSFSSFDLLKE | |||
| Full Sequence |
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| Protein Sequence Length: 678 Download |
| MDTESWKFLR SVCILSFLLG SCFVYQSLRV VVAQEDTKPS VTLQVDASYG AGRPIPETLF 60 GIFFEEINHA GAGGLWAELV SNRGFEAGGQ NTPSNIWPWS IVGDQSSIYV ATDRSSLFER 120 NKIALRMDVL CDSNGCPSGG VGVYNPGYWG MNIEEGKKYK VAFYVRSTGD IDLSVSLTSS 180 NGSLTLASEN IIASASDVSK WTKKEVLLVA KGTDHGARLQ LTTSKKGSIW IDQVSAMPVD 240 TYKGHGFRND LFQMMVDIKP RFIRFPGGCF VEGEWLSNAF RWKETVGPWE ERPGHFGDVW 300 KYWTDDGLGH FEFFQLAEDI GAAPIWVFNN GISHNDEVET ASVMPFVQEA LDGIEFARGD 360 ANSTWGSVRA AMGRQEPFEL KYVAIGNEDC GKTYYKGNYI VFYNAIKKAY PDIKIISNCD 420 GSSRPLDHPA DYYDYHIYTS ASSLFSMYHQ FDRTSRNGPK AFVSEYAVTG KDAGTGSLLA 480 ALAEAAFLIG LEKNSDIVEM ASYAPLFVNT NDRRWNPDAI VFNSSHLYGT PSYWVQRFFA 540 ESSGSTLLAS TLKGNSSSLV ASAITWQNNG KDYIRIKAVN FGASSVNLKV LVTGLDPNVM 600 KVSGSKKTIL TSTNVMDENS FTQPEKVVPH ESLLEMAEED LTVILPPHSF SSFDLLKESA 660 KIRMPISDSS STSSQKV* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 0.001 | 493 | 651 | 177 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| COG3534 | AbfA | 1.0e-30 | 246 | 391 | 146 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 3.0e-37 | 492 | 649 | 168 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 6.0e-45 | 492 | 649 | 166 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK50089.1 | 0 | 1 | 671 | 1 | 671 | AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana] |
| GenBank | AAO92261.1 | 0 | 1 | 671 | 1 | 671 | alpha-L-arabinofuranosidase [Arabidopsis thaliana] |
| RefSeq | NP_187685.1 | 0 | 1 | 671 | 1 | 671 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| RefSeq | NP_197984.2 | 0 | 1 | 674 | 1 | 672 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] |
| RefSeq | XP_002523672.1 | 0 | 36 | 674 | 35 | 677 | Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ug5_F | 4e-17 | 246 | 559 | 68 | 393 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 3ug5_E | 4e-17 | 246 | 559 | 68 | 393 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 3ug5_D | 4e-17 | 246 | 559 | 68 | 393 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 3ug5_C | 4e-17 | 246 | 559 | 68 | 393 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 3ug5_B | 4e-17 | 246 | 559 | 68 | 393 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BX841311 | 333 | 1 | 333 | 0 |
| HO852683 | 414 | 246 | 655 | 0 |
| HO780740 | 394 | 274 | 664 | 0 |
| HO807291 | 318 | 153 | 470 | 0 |
| JG577027 | 333 | 103 | 435 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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