y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00021975m |
Family | GH51 |
Protein Properties | Length: 209 Molecular Weight: 22387 Isoelectric Point: 4.4326 |
Chromosome | Chromosome/Scaffold: 0145568 Start: 625 End: 1964 |
Description | alpha-L-arabinofuranosidase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH51 | 2 | 197 | 3.8e-34 |
QAFVSEYAVWRSDAGRGSLLASLAEAAFLTGLEKNSDIVQMASYAPLFVNDNDRTWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMVHPITVNSSYSGS LAASAITWQDSENSFLRVKVVNFGSDAVSLIISTSGLQASVNALGSTTTVLTSGNVIDENSFSNPNKVVPVKSELSNAAEQMQVTLAPHSFSAFDL |
Full Sequence |
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Protein Sequence Length: 209 Download |
MQAFVSEYAV WRSDAGRGSL LASLAEAAFL TGLEKNSDIV QMASYAPLFV NDNDRTWNPD 60 AIVFNSWQHY GTPSYWMQTL FRESSGAMVH PITVNSSYSG SLAASAITWQ DSENSFLRVK 120 VVNFGSDAVS LIISTSGLQA SVNALGSTTT VLTSGNVIDE NSFSNPNKVV PVKSELSNAA 180 EQMQVTLAPH SFSAFDLALA QSKLVAEM* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3534 | AbfA | 6.0e-5 | 35 | 193 | 175 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
pfam06964 | Alpha-L-AF_C | 1.0e-35 | 6 | 191 | 203 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
smart00813 | Alpha-L-AF_C | 5.0e-49 | 6 | 191 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. |
Gene Ontology | |
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GO Term | Description |
GO:0046373 | L-arabinose metabolic process |
GO:0046556 | alpha-N-arabinofuranosidase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF86832.2 | 0 | 2 | 208 | 224 | 430 | unknown [Zea mays] |
GenBank | ACN33779.1 | 0 | 2 | 208 | 474 | 680 | unknown [Zea mays] |
RefSeq | NP_001066062.1 | 0 | 2 | 208 | 454 | 660 | Os12g0128700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148977.1 | 0 | 2 | 208 | 474 | 680 | alpha-N-arabinofuranosidase A [Zea mays] |
RefSeq | XP_002442705.1 | 0 | 2 | 208 | 450 | 656 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG957463 | 208 | 2 | 209 | 0 |
DN152560 | 208 | 2 | 209 | 0 |
JG957844 | 208 | 2 | 209 | 0 |
JG891613 | 208 | 2 | 209 | 0 |
JG876675 | 208 | 2 | 209 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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