y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.016G025500.1 |
Family | GH51 |
Protein Properties | Length: 674 Molecular Weight: 73677.8 Isoelectric Point: 4.9587 |
Chromosome | Chromosome/Scaffold: 16 Start: 1435414 End: 1441717 |
Description | alpha-L-arabinofuranosidase 1 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH51 | 225 | 656 | 0 |
GVIWFDQVSAMPLDTYKGHGFRNELIEMIDDIKPQFVRFPGGCFVEGEWLRNAFRWKESIGPWEERPGHFGDVWMYWTDDGLGYFEFLQLTEDLGARPIW VFNNGISHQDQVDTTAVSPFVQEALDGLEFARGDSNSKWGSVRAAMGHPEPFDLKYVAVGNEDCGKKNYRGNYLKFYNAIRSAYPDIKIISNCDGSSRSL DHPADYYDYHVYTSASSLFSMTRQFDRTSRTGPKAFVSEYAVTGKDAGTGSLLAALAEAGFLIGLEKNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSM HYGTPSYWVQKFFRESSGATLLDAKLQTNSSTLVASAITWQNSDGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKK VVPAQTMLENADKDMDVVLSPYSLTSFDLLTE |
Full Sequence |
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Protein Sequence Length: 674 Download |
MGEKMSSCKA SCSVLLACFI VGLCSVCQCS AAEVDANQTA NLIINGSSTR PIPETLFGIF 60 FEEINHAGAG GIWAELVNNR GFEAGGQNTP SNIAPWSIIG DQSSLIVSTD RSSCFERNKV 120 ALRMDVLCDS TGGNICPAGG VGIYNPGFWG MNIEQGKAYK VVLYVRSLGS INVSVSLTSS 180 DGSQILASAN IVDSDVSNWT KAEVLLEAKG TNPNSRLQLT TSRKGVIWFD QVSAMPLDTY 240 KGHGFRNELI EMIDDIKPQF VRFPGGCFVE GEWLRNAFRW KESIGPWEER PGHFGDVWMY 300 WTDDGLGYFE FLQLTEDLGA RPIWVFNNGI SHQDQVDTTA VSPFVQEALD GLEFARGDSN 360 SKWGSVRAAM GHPEPFDLKY VAVGNEDCGK KNYRGNYLKF YNAIRSAYPD IKIISNCDGS 420 SRSLDHPADY YDYHVYTSAS SLFSMTRQFD RTSRTGPKAF VSEYAVTGKD AGTGSLLAAL 480 AEAGFLIGLE KNSDIVEMAS YAPLFVNAND RRWNPDAIVF NSSMHYGTPS YWVQKFFRES 540 SGATLLDAKL QTNSSTLVAS AITWQNSDGK TYLKIKIVNF GNSKVNLKVS IDGLGLSSQL 600 SGSTKTVLTS SNLMDENSFA NPKKVVPAQT MLENADKDMD VVLSPYSLTS FDLLTESNNI 660 RMPQTDSLSR SSI* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3534 | AbfA | 2.0e-33 | 244 | 647 | 483 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
pfam06964 | Alpha-L-AF_C | 3.0e-39 | 462 | 647 | 204 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
smart00813 | Alpha-L-AF_C | 4.0e-47 | 462 | 647 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. |
Gene Ontology | |
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GO Term | Description |
GO:0046373 | L-arabinose metabolic process |
GO:0046556 | alpha-N-arabinofuranosidase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP97437.1 | 0 | 5 | 673 | 1 | 675 | alpha-L-arabinofuranosidase [Malus x domestica] |
DDBJ | BAF42035.1 | 0 | 5 | 673 | 1 | 675 | alpha-Arabinosidase1 [Pyrus communis] |
RefSeq | XP_002307940.1 | 0 | 5 | 673 | 1 | 670 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322584.1 | 0 | 1 | 673 | 1 | 667 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523672.1 | 0 | 29 | 673 | 29 | 678 | Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ug5_F | 4e-23 | 244 | 656 | 68 | 504 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3ug5_E | 4e-23 | 244 | 656 | 68 | 504 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3ug5_D | 4e-23 | 244 | 656 | 68 | 504 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3ug5_C | 4e-23 | 244 | 656 | 68 | 504 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3ug5_B | 4e-23 | 244 | 656 | 68 | 504 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |