Genome Details
Selected Rep_genome_ID: ShaoY_2019_ERR3406219_bin.3
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| ShaoY_2019_ERR3406219_bin.3 | 2,544,171 | 98.95% | 0.523% | UK | Europe | ELGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| ShaoY_2019_ERR3406219_bin.3_CGC23 | CGCFAM_00012 | Yes | 5 | 2 | host glycan/beta-glucan |
| ShaoY_2019_ERR3406219_bin.3_CGC9 | CGCFAM_00066 | Yes | 3 | 1 | beta-mannan |
| ShaoY_2019_ERR3406219_bin.3_CGC30 | CGCFAM_00102 | Yes | 10 | 4 | |
| ShaoY_2019_ERR3406219_bin.3_CGC21 | CGCFAM_00178 | Yes | 7 | 4 | |
| ShaoY_2019_ERR3406219_bin.3_CGC6 | CGCFAM_00403 | Yes | 8 | 1 | |
| ShaoY_2019_ERR3406219_bin.3_CGC31 | CGCFAM_00645 | Yes | 6 | 1 | |
| ShaoY_2019_ERR3406219_bin.3_CGC35 | CGCFAM_00958 | Yes | 4 | 2 | |
| ShaoY_2019_ERR3406219_bin.3_CGC36 | CGCFAM_05177 | Yes | 8 | 1 | |
| ShaoY_2019_ERR3406219_bin.3_CGC20 | CGCFAM_08755 | Yes | 3 | 2 | |
| ShaoY_2019_ERR3406219_bin.3_CGC24 | CGCFAM_08951 | Yes | 8 | 2 | |
| ShaoY_2019_ERR3406219_bin.3_CGC2 | CGCFAM_10766 | Yes | 13 | 3 | |
| ShaoY_2019_ERR3406219_bin.3_CGC17 | CGCFAM_10767 | Yes | 7 | 1 | |
| ShaoY_2019_ERR3406219_bin.3_CGC33 | CGCFAM_10768 | Yes | 6 | 2 |
Top CAZyme Families