Cluster: ShaoY_2019_ERR3406219_bin.3_CGC36
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406219_bin.3
- CGC Family ID: CGCFAM_05177
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_24935 | ShaoY_2019_ERR3406219_bin.3_k141_24935_55 | 68226 | 69173 | - | GT2 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_24935 | ShaoY_2019_ERR3406219_bin.3_k141_24935_56 | 69155 | 69826 | - | 9.B.105.2.2 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_24935 | ShaoY_2019_ERR3406219_bin.3_k141_24935_57 | 69816 | 70466 | - | 9.B.27.2.3 |
| STP | ShaoY_2019_ERR3406219_bin.3_k141_24935 | ShaoY_2019_ERR3406219_bin.3_k141_24935_58 | 70683 | 72041 | - | HATPase_c | HisKA |
| TF | ShaoY_2019_ERR3406219_bin.3_k141_24935 | ShaoY_2019_ERR3406219_bin.3_k141_24935_59 | 72051 | 72746 | - | Trans_reg_C |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_24935 | ShaoY_2019_ERR3406219_bin.3_k141_24935_60 | 72990 | 73895 | + | 8.A.5.1.4 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_24935 | ShaoY_2019_ERR3406219_bin.3_k141_24935_61 | 74124 | 74933 | + | 8.A.5.1.4 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_24935 | ShaoY_2019_ERR3406219_bin.3_k141_24935_62 | 74963 | 75982 | + | 8.A.5.1.6 |
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_24935_55
Type: CAZyme
Location: 68226 - 69173 (-)
Type: CAZyme
Location: 68226 - 69173 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_24935_56
Type: TC
Location: 69155 - 69826 (-)
Type: TC
Location: 69155 - 69826 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_24935_57
Type: TC
Location: 69816 - 70466 (-)
Type: TC
Location: 69816 - 70466 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_24935_58
Type: STP
Location: 70683 - 72041 (-)
Type: STP
Location: 70683 - 72041 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_24935_59
Type: TF
Location: 72051 - 72746 (-)
Type: TF
Location: 72051 - 72746 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_24935_60
Type: TC
Location: 72990 - 73895 (+)
Type: TC
Location: 72990 - 73895 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_24935_61
Type: TC
Location: 74124 - 74933 (+)
Type: TC
Location: 74124 - 74933 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_24935_62
Type: TC
Location: 74963 - 75982 (+)
Type: TC
Location: 74963 - 75982 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.