Cluster: ShaoY_2019_ERR3406219_bin.3_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3406219_bin.3
- CGC Family ID: CGCFAM_10766
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_16 | 12667 | 14853 | + | GH36 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_17 | 14954 | 16291 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_18 | 16275 | 17033 | - | 3.A.1.134.8 |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_19 | 17323 | 18909 | - | CBM91 | GH43_11 |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_20 | 19030 | 22236 | - | CBM62 |
| TF | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_21 | 22727 | 25315 | + | HTH_5 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_22 | 25460 | 25954 | + | 4.A.6.1.16 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_23 | 25957 | 26754 | + | 4.A.6.1.19 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_24 | 26747 | 27571 | + | 4.A.6.1.19 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_25 | 27678 | 28115 | - | Usp |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_26 | 28130 | 29788 | - | 2.A.55.2.6 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_27 | 30209 | 30877 | + | 2.A.89.3.2 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_2958 | ShaoY_2019_ERR3406219_bin.3_k141_2958_28 | 30915 | 31613 | + | 2.A.89.3.2 |
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_16
Type: CAZyme
Location: 12667 - 14853 (+)
Type: CAZyme
Location: 12667 - 14853 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_17
Type:
Location: 14954 - 16291 (-)
Type:
Location: 14954 - 16291 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_18
Type: TC
Location: 16275 - 17033 (-)
Type: TC
Location: 16275 - 17033 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_19
Type: CAZyme
Location: 17323 - 18909 (-)
Type: CAZyme
Location: 17323 - 18909 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_20
Type: CAZyme
Location: 19030 - 22236 (-)
Type: CAZyme
Location: 19030 - 22236 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_21
Type: TF
Location: 22727 - 25315 (+)
Type: TF
Location: 22727 - 25315 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_22
Type: TC
Location: 25460 - 25954 (+)
Type: TC
Location: 25460 - 25954 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_23
Type: TC
Location: 25957 - 26754 (+)
Type: TC
Location: 25957 - 26754 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_24
Type: TC
Location: 26747 - 27571 (+)
Type: TC
Location: 26747 - 27571 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_25
Type: pfam
Location: 27678 - 28115 (-)
Type: pfam
Location: 27678 - 28115 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_26
Type: TC
Location: 28130 - 29788 (-)
Type: TC
Location: 28130 - 29788 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_27
Type: TC
Location: 30209 - 30877 (+)
Type: TC
Location: 30209 - 30877 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_2958_28
Type: TC
Location: 30915 - 31613 (+)
Type: TC
Location: 30915 - 31613 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.