Cluster: ShaoY_2019_ERR3406219_bin.3_CGC30
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3406219_bin.3
- CGC Family ID: CGCFAM_00102
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_14003 | ShaoY_2019_ERR3406219_bin.3_k141_14003_61 | 50704 | 51597 | + | GT8 |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_14003 | ShaoY_2019_ERR3406219_bin.3_k141_14003_62 | 51628 | 52644 | + | GT113 |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_14003 | ShaoY_2019_ERR3406219_bin.3_k141_14003_63 | 52717 | 53736 | + | GT113 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406219_bin.3_k141_14003 | ShaoY_2019_ERR3406219_bin.3_k141_14003_64 | 54077 | 54280 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_14003 | ShaoY_2019_ERR3406219_bin.3_k141_14003_65 | 54354 | 56702 | + | 3.A.5.10.1 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_14003 | ShaoY_2019_ERR3406219_bin.3_k141_14003_66 | 56713 | 57942 | + | SecY |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_14003 | ShaoY_2019_ERR3406219_bin.3_k141_14003_67 | 57960 | 59534 | + | Asp1 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_14003 | ShaoY_2019_ERR3406219_bin.3_k141_14003_68 | 59535 | 61094 | + | 3.A.5.10.1 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_14003 | ShaoY_2019_ERR3406219_bin.3_k141_14003_69 | 61094 | 61873 | + | Sec-ASP3 |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_14003 | ShaoY_2019_ERR3406219_bin.3_k141_14003_70 | 61913 | 63367 | + | GT4 |
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_14003_61
Type: CAZyme
Location: 50704 - 51597 (+)
Type: CAZyme
Location: 50704 - 51597 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_14003_62
Type: CAZyme
Location: 51628 - 52644 (+)
Type: CAZyme
Location: 51628 - 52644 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_14003_63
Type: CAZyme
Location: 52717 - 53736 (+)
Type: CAZyme
Location: 52717 - 53736 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_14003_64
Type:
Location: 54077 - 54280 (-)
Type:
Location: 54077 - 54280 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_14003_65
Type: TC
Location: 54354 - 56702 (+)
Type: TC
Location: 54354 - 56702 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_14003_66
Type: pfam
Location: 56713 - 57942 (+)
Type: pfam
Location: 56713 - 57942 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_14003_67
Type: pfam
Location: 57960 - 59534 (+)
Type: pfam
Location: 57960 - 59534 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_14003_68
Type: TC
Location: 59535 - 61094 (+)
Type: TC
Location: 59535 - 61094 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_14003_69
Type: pfam
Location: 61094 - 61873 (+)
Type: pfam
Location: 61094 - 61873 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_14003_70
Type: CAZyme
Location: 61913 - 63367 (+)
Type: CAZyme
Location: 61913 - 63367 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.