Cluster: ShaoY_2019_ERR3406219_bin.3_CGC33
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406219_bin.3
- CGC Family ID: CGCFAM_10768
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_49 | 59676 | 60770 | - | GH170 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_50 | 60767 | 61030 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_51 | 61119 | 61823 | - | GntR |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_52 | 61970 | 63268 | + | 4.A.3.2.8 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_53 | 63295 | 64488 | + | Acetyltransf_9 | SCP2_2 | Acetyltransf_17 |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_54 | 64550 | 65890 | - | CE4 |
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_49
Type: CAZyme
Location: 59676 - 60770 (-)
Type: CAZyme
Location: 59676 - 60770 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_50
Type:
Location: 60767 - 61030 (-)
Type:
Location: 60767 - 61030 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_51
Type: TF
Location: 61119 - 61823 (-)
Type: TF
Location: 61119 - 61823 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_52
Type: TC
Location: 61970 - 63268 (+)
Type: TC
Location: 61970 - 63268 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_53
Type: pfam
Location: 63295 - 64488 (+)
Type: pfam
Location: 63295 - 64488 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_54
Type: CAZyme
Location: 64550 - 65890 (-)
Type: CAZyme
Location: 64550 - 65890 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.