Genome Details
Selected Rep_genome_ID: Rep_419
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Paludibacteraceae
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_3997 | 2,727,526 | 96.84% | 1.344% | NA | Europe | HRGM |
| Rep_419 | 2,630,893 | 98.9247% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_419_CGC13 | CGCFAM_00003 | Yes | 8 | 3 | |
| Rep_419_CGC24 | CGCFAM_00006 | Yes | 4 | 1 | |
| Rep_419_CGC1 | CGCFAM_00023 | Yes | 4 | 2 | |
| Rep_419_CGC6 | CGCFAM_00043 | Yes | 8 | 4 | alpha-glucan |
| Rep_419_CGC12 | CGCFAM_00061 | Yes | 4 | 1 | |
| Rep_419_CGC26 | CGCFAM_00062 | Yes | 4 | 1 | beta-glucan |
| Rep_419_CGC5 | CGCFAM_00079 | Yes | 5 | 2 | pectin |
| Rep_419_CGC16 | CGCFAM_00184 | Yes | 4 | 1 | |
| Rep_419_CGC8 | CGCFAM_00368 | Yes | 4 | 2 | |
| Rep_419_CGC2 | CGCFAM_00523 | Yes | 3 | 1 | |
| Rep_419_CGC20 | CGCFAM_00733 | Yes | 3 | 2 | |
| Rep_419_CGC11 | CGCFAM_01056 | Yes | 4 | 1 | |
| Rep_419_CGC21 | CGCFAM_03917 | Yes | 4 | 1 |
Top CAZyme Families