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Cluster: Rep_419_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_419_c_56 Rep_419_c_56_15 14904 17354 + 3.A.11.3.1
CAZyme Rep_419_c_56 Rep_419_c_56_16 17332 18159 - GT2
pfam Rep_419_c_56 Rep_419_c_56_17 18171 19157 - 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
CAZyme Rep_419_c_56 Rep_419_c_56_18 19154 19915 - GT2
CAZyme Rep_419_c_56 Rep_419_c_56_19 19875 20636 - GT2
NULL(UNKNOWN) Rep_419_c_56 Rep_419_c_56_20 20633 21478 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_419_c_56 Rep_419_c_56_21 21488 22657 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_419_c_56 Rep_419_c_56_22 22647 23891 - 2.A.66.2.1
Gene ID: Rep_419_c_56_15
Type: TC
Location: 14904 - 17354 (+)
Gene ID: Rep_419_c_56_16
Type: CAZyme
Location: 17332 - 18159 (-)
Gene ID: Rep_419_c_56_17
Type: pfam
Location: 18171 - 19157 (-)
Gene ID: Rep_419_c_56_18
Type: CAZyme
Location: 19154 - 19915 (-)
Gene ID: Rep_419_c_56_19
Type: CAZyme
Location: 19875 - 20636 (-)
Gene ID: Rep_419_c_56_20
Type:
Location: 20633 - 21478 (-)
Gene ID: Rep_419_c_56_21
Type:
Location: 21488 - 22657 (-)
Gene ID: Rep_419_c_56_22
Type: TC
Location: 22647 - 23891 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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