Cluster: Rep_419_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: pectin
- Genome ID: Rep_419
- CGC Family ID: CGCFAM_00079
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_419_c_19 | Rep_419_c_19_3 | 2491 | 4770 | - | GH3 |
| NULL(UNKNOWN) | Rep_419_c_19 | Rep_419_c_19_4 | 4850 | 6199 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_419_c_19 | Rep_419_c_19_5 | 6253 | 7869 | - | GH144 |
| TC | Rep_419_c_19 | Rep_419_c_19_6 | 7890 | 9377 | - | 8.A.46.1.5 |
| TC | Rep_419_c_19 | Rep_419_c_19_7 | 9413 | 12448 | - | 1.B.14.6.1 |
Gene ID: Rep_419_c_19_3
Type: CAZyme
Location: 2491 - 4770 (-)
Type: CAZyme
Location: 2491 - 4770 (-)
Gene ID: Rep_419_c_19_4
Type:
Location: 4850 - 6199 (-)
Type:
Location: 4850 - 6199 (-)
Gene ID: Rep_419_c_19_5
Type: CAZyme
Location: 6253 - 7869 (-)
Type: CAZyme
Location: 6253 - 7869 (-)
Gene ID: Rep_419_c_19_6
Type: TC
Location: 7890 - 9377 (-)
Type: TC
Location: 7890 - 9377 (-)
Gene ID: Rep_419_c_19_7
Type: TC
Location: 9413 - 12448 (-)
Type: TC
Location: 9413 - 12448 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Paludibacteraceae
Genus
Gallipaludibacter
Species
Gallipaludibacter merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.