Genome Details
Selected Rep_genome_ID: Rep_126
Total Genomes Found: 14
Total Genomes Found: 14
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella timonensis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| GCA_021617735.1_ASM2161773v1_genomic | 2,841,890 | 92.03% | 0.93% | NA | Africa | H3AfricaPhase1 |
| GCA_021618805.1_ASM2161880v1_genomic | 2,678,972 | 92.94% | 1.05% | NA | Africa | H3AfricaPhase1 |
| GCA_021623485.1_ASM2162348v1_genomic | 2,692,859 | 95.17% | 0.37% | NA | Africa | H3AfricaPhase1 |
| GCA_021627515.1_ASM2162751v1_genomic | 2,666,220 | 95.72% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021627785.1_ASM2162778v1_genomic | 2,620,727 | 94.13% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021628385.1_ASM2162838v1_genomic | 2,627,526 | 93.25% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021631315.1_ASM2163131v1_genomic | 3,001,735 | 97.42% | 0.76% | NA | Africa | H3AfricaPhase1 |
| GCA_021632525.1_ASM2163252v1_genomic | 2,597,407 | 90.66% | 1.43% | NA | Africa | H3AfricaPhase1 |
| GCA_021632745.1_ASM2163274v1_genomic | 2,681,782 | 94.11% | 0.74% | NA | Africa | H3AfricaPhase1 |
| GCA_021638665.1_ASM2163866v1_genomic | 2,712,247 | 96.84% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021639705.1_ASM2163970v1_genomic | 2,601,356 | 93.76% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021641305.1_ASM2164130v1_genomic | 2,549,932 | 92.04% | 2.23% | NA | Africa | H3AfricaPhase1 |
| GH123_26 | 2,865,382 | 97.96% | 0% | NA | Africa | H3AfricaPhase2 |
| Rep_126 | 3,157,218 | 97.5836% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_126_CGC4 | CGCFAM_00006 | Yes | 6 | 2 | |
| Rep_126_CGC3 | CGCFAM_00025 | Yes | 8 | 3 | pectin/alpha-glucan |
| Rep_126_CGC6 | CGCFAM_00048 | Yes | 12 | 3 | |
| Rep_126_CGC2 | CGCFAM_00165 | Yes | 4 | 1 | |
| Rep_126_CGC7 | CGCFAM_00482 | Yes | 5 | 2 | fructan |
| Rep_126_CGC12 | CGCFAM_03910 | Yes | 6 | 2 | |
| Rep_126_CGC21 | CGCFAM_04855 | Yes | 12 | 3 | |
| Rep_126_CGC11 | CGCFAM_06239 | Yes | 3 | 1 | |
| Rep_126_CGC22 | CGCFAM_07848 | Yes | 7 | 1 |
Top CAZyme Families