Cluster: Rep_126_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_126
- CGC Family ID: CGCFAM_00048
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_126_c_2 | Rep_126_c_2_319 | 348344 | 351151 | - | GH84 |
| pfam | Rep_126_c_2 | Rep_126_c_2_320 | 351598 | 353211 | + | Fumerase | Fumerase_C |
| NULL(UNKNOWN) | Rep_126_c_2 | Rep_126_c_2_321 | 353497 | 353640 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_126_c_2 | Rep_126_c_2_322 | 353717 | 355177 | - | GH23 |
| pfam | Rep_126_c_2 | Rep_126_c_2_323 | 355215 | 356090 | - | DUF5683 |
| pfam | Rep_126_c_2 | Rep_126_c_2_324 | 356233 | 357129 | - | ParBc | HTH_ParB | ParB_dimer |
| TC | Rep_126_c_2 | Rep_126_c_2_325 | 357132 | 357899 | - | 8.A.3.2.3 |
| pfam | Rep_126_c_2 | Rep_126_c_2_326 | 358231 | 358986 | + | SurE |
| CAZyme | Rep_126_c_2 | Rep_126_c_2_327 | 359163 | 360308 | + | GT19 |
| NULL(UNKNOWN) | Rep_126_c_2 | Rep_126_c_2_328 | 360460 | 360930 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_126_c_2 | Rep_126_c_2_329 | 361075 | 362043 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_126_c_2 | Rep_126_c_2_330 | 363055 | 364545 | - | 2.A.47.4.5 |
Gene ID: Rep_126_c_2_319
Type: CAZyme
Location: 348344 - 351151 (-)
Type: CAZyme
Location: 348344 - 351151 (-)
Gene ID: Rep_126_c_2_320
Type: pfam
Location: 351598 - 353211 (+)
Type: pfam
Location: 351598 - 353211 (+)
Gene ID: Rep_126_c_2_321
Type:
Location: 353497 - 353640 (+)
Type:
Location: 353497 - 353640 (+)
Gene ID: Rep_126_c_2_322
Type: CAZyme
Location: 353717 - 355177 (-)
Type: CAZyme
Location: 353717 - 355177 (-)
Gene ID: Rep_126_c_2_323
Type: pfam
Location: 355215 - 356090 (-)
Type: pfam
Location: 355215 - 356090 (-)
Gene ID: Rep_126_c_2_324
Type: pfam
Location: 356233 - 357129 (-)
Type: pfam
Location: 356233 - 357129 (-)
Gene ID: Rep_126_c_2_325
Type: TC
Location: 357132 - 357899 (-)
Type: TC
Location: 357132 - 357899 (-)
Gene ID: Rep_126_c_2_326
Type: pfam
Location: 358231 - 358986 (+)
Type: pfam
Location: 358231 - 358986 (+)
Gene ID: Rep_126_c_2_327
Type: CAZyme
Location: 359163 - 360308 (+)
Type: CAZyme
Location: 359163 - 360308 (+)
Gene ID: Rep_126_c_2_328
Type:
Location: 360460 - 360930 (+)
Type:
Location: 360460 - 360930 (+)
Gene ID: Rep_126_c_2_329
Type:
Location: 361075 - 362043 (+)
Type:
Location: 361075 - 362043 (+)
Gene ID: Rep_126_c_2_330
Type: TC
Location: 363055 - 364545 (-)
Type: TC
Location: 363055 - 364545 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.