Cluster: Rep_126_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_126
- CGC Family ID: CGCFAM_00006
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_126_c_2 | Rep_126_c_2_84 | 103725 | 105254 | + | 2.A.66.1.40 |
| CAZyme | Rep_126_c_2 | Rep_126_c_2_85 | 105282 | 106163 | + | GT2 |
| pfam | Rep_126_c_2 | Rep_126_c_2_86 | 106299 | 106844 | + | Hexapep | Hexapep_2 |
| CAZyme | Rep_126_c_2 | Rep_126_c_2_87 | 107080 | 108234 | + | GT4 |
| pfam | Rep_126_c_2 | Rep_126_c_2_88 | 108241 | 109335 | + | NTP_transf_5 |
| TC | Rep_126_c_2 | Rep_126_c_2_89 | 109393 | 110919 | + | 9.B.18.1.3 |
Gene ID: Rep_126_c_2_84
Type: TC
Location: 103725 - 105254 (+)
Type: TC
Location: 103725 - 105254 (+)
Gene ID: Rep_126_c_2_85
Type: CAZyme
Location: 105282 - 106163 (+)
Type: CAZyme
Location: 105282 - 106163 (+)
Gene ID: Rep_126_c_2_86
Type: pfam
Location: 106299 - 106844 (+)
Type: pfam
Location: 106299 - 106844 (+)
Gene ID: Rep_126_c_2_87
Type: CAZyme
Location: 107080 - 108234 (+)
Type: CAZyme
Location: 107080 - 108234 (+)
Gene ID: Rep_126_c_2_88
Type: pfam
Location: 108241 - 109335 (+)
Type: pfam
Location: 108241 - 109335 (+)
Gene ID: Rep_126_c_2_89
Type: TC
Location: 109393 - 110919 (+)
Type: TC
Location: 109393 - 110919 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.