Genome Details
Selected Rep_genome_ID: HRGMv2_4000
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella rodentium
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_4000 | 2,921,216 | 94.63% | 0% | Tanzania | Africa | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| PUL0619_HRGMv2_4000_C0 | CGCFAM_00001 | Yes | 4 | 1 | xylan |
| HRGMv2_4000_CGC5 | CGCFAM_00034 | Yes | 17 | 6 | |
| HRGMv2_4000_CGC2 | CGCFAM_00048 | Yes | 14 | 3 | |
| HRGMv2_4000_CGC9 | CGCFAM_00083 | Yes | 3 | 1 | beta-glucan |
| HRGMv2_4000_CGC26 | CGCFAM_00523 | Yes | 4 | 1 | |
| HRGMv2_4000_CGC13 | CGCFAM_02553 | Yes | 7 | 3 | |
| HRGMv2_4000_CGC24 | CGCFAM_04495 | Yes | 3 | 2 | |
| HRGMv2_4000_CGC3 | CGCFAM_04783 | Yes | 9 | 3 | |
| HRGMv2_4000_CGC25 | CGCFAM_06538 | Yes | 4 | 1 | |
| HRGMv2_4000_CGC10 | CGCFAM_09688 | Yes | 5 | 3 | |
| HRGMv2_4000_CGC12 | CGCFAM_09689 | Yes | 3 | 1 | |
| HRGMv2_4000_CGC20 | CGCFAM_09690 | Yes | 4 | 2 |
Top CAZyme Families