dbCAN Logo

Cluster: HRGMv2_4000_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4000_9 HRGMv2_4000_9_2 605 1948 - 2.A.62.1.3
pfam HRGMv2_4000_9 HRGMv2_4000_9_3 2368 3852 + FGGY_N | FGGY_C
pfam HRGMv2_4000_9 HRGMv2_4000_9_4 3969 5225 + RhaA
TC HRGMv2_4000_9 HRGMv2_4000_9_5 5320 6354 + 2.A.7.6.1
CAZyme HRGMv2_4000_9 HRGMv2_4000_9_6 6496 8487 - GH13_46
CAZyme HRGMv2_4000_9 HRGMv2_4000_9_7 8590 10542 - GH13_14
CAZyme HRGMv2_4000_9 HRGMv2_4000_9_8 10565 12709 - GH97
CAZyme HRGMv2_4000_9 HRGMv2_4000_9_9 12745 15423 - GH77
TC HRGMv2_4000_9 HRGMv2_4000_9_10 15446 16759 - 2.A.2.6.3
STP HRGMv2_4000_9 HRGMv2_4000_9_11 16850 17074 - Peripla_BP_3
TF HRGMv2_4000_9 HRGMv2_4000_9_12 17098 17877 - LacI
TC HRGMv2_4000_9 HRGMv2_4000_9_13 18126 21173 + 1.B.14.6.1
TC HRGMv2_4000_9 HRGMv2_4000_9_14 21197 22867 + 8.A.46.1.1
pfam HRGMv2_4000_9 HRGMv2_4000_9_15 22888 24081 + SusE
pfam HRGMv2_4000_9 HRGMv2_4000_9_16 24102 25499 + SusF_N
CAZyme HRGMv2_4000_9 HRGMv2_4000_9_17 25919 27913 + GH13_6
CAZyme HRGMv2_4000_9 HRGMv2_4000_9_18 27938 29209 + GH53
Gene ID: HRGMv2_4000_9_2
Type: TC
Location: 605 - 1948 (-)
Gene ID: HRGMv2_4000_9_3
Type: pfam
Location: 2368 - 3852 (+)
Gene ID: HRGMv2_4000_9_4
Type: pfam
Location: 3969 - 5225 (+)
Gene ID: HRGMv2_4000_9_5
Type: TC
Location: 5320 - 6354 (+)
Gene ID: HRGMv2_4000_9_6
Type: CAZyme
Location: 6496 - 8487 (-)
Gene ID: HRGMv2_4000_9_7
Type: CAZyme
Location: 8590 - 10542 (-)
Gene ID: HRGMv2_4000_9_8
Type: CAZyme
Location: 10565 - 12709 (-)
Gene ID: HRGMv2_4000_9_9
Type: CAZyme
Location: 12745 - 15423 (-)
Gene ID: HRGMv2_4000_9_10
Type: TC
Location: 15446 - 16759 (-)
Gene ID: HRGMv2_4000_9_11
Type: STP
Location: 16850 - 17074 (-)
Gene ID: HRGMv2_4000_9_12
Type: TF
Location: 17098 - 17877 (-)
Gene ID: HRGMv2_4000_9_13
Type: TC
Location: 18126 - 21173 (+)
Gene ID: HRGMv2_4000_9_14
Type: TC
Location: 21197 - 22867 (+)
Gene ID: HRGMv2_4000_9_15
Type: pfam
Location: 22888 - 24081 (+)
Gene ID: HRGMv2_4000_9_16
Type: pfam
Location: 24102 - 25499 (+)
Gene ID: HRGMv2_4000_9_17
Type: CAZyme
Location: 25919 - 27913 (+)
Gene ID: HRGMv2_4000_9_18
Type: CAZyme
Location: 27938 - 29209 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List