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Cluster: HRGMv2_4000_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4000_5 HRGMv2_4000_5_8 11393 12421 + GT113
pfam HRGMv2_4000_5 HRGMv2_4000_5_9 12436 13266 + LicD
CAZyme HRGMv2_4000_5 HRGMv2_4000_5_10 13263 14039 + GT2
pfam HRGMv2_4000_5 HRGMv2_4000_5_11 14051 14464 - CTP_transf_like
NULL(UNKNOWN) HRGMv2_4000_5 HRGMv2_4000_5_12 14461 15318 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4000_5 HRGMv2_4000_5_13 15321 16178 - GT11
pfam HRGMv2_4000_5 HRGMv2_4000_5_14 16292 17398 + Acyl_transf_3
pfam HRGMv2_4000_5 HRGMv2_4000_5_15 17421 18344 - Lip_A_acyltrans
TC HRGMv2_4000_5 HRGMv2_4000_5_16 18523 20352 - 3.A.1.106.1
Gene ID: HRGMv2_4000_5_8
Type: CAZyme
Location: 11393 - 12421 (+)
Gene ID: HRGMv2_4000_5_9
Type: pfam
Location: 12436 - 13266 (+)
Gene ID: HRGMv2_4000_5_10
Type: CAZyme
Location: 13263 - 14039 (+)
Gene ID: HRGMv2_4000_5_11
Type: pfam
Location: 14051 - 14464 (-)
Gene ID: HRGMv2_4000_5_12
Type:
Location: 14461 - 15318 (-)
Gene ID: HRGMv2_4000_5_13
Type: CAZyme
Location: 15321 - 16178 (-)
Gene ID: HRGMv2_4000_5_14
Type: pfam
Location: 16292 - 17398 (+)
Gene ID: HRGMv2_4000_5_15
Type: pfam
Location: 17421 - 18344 (-)
Gene ID: HRGMv2_4000_5_16
Type: TC
Location: 18523 - 20352 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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