PROTEIN: HRGMv2_4000_5_12
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Protein File & Metadata
Source:
HRGMv2_4000_5_12.pdb
Genome ID:
Protein ID:
HRGMv2_4000_5_12
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Protein Sequence
MNILYLVFGR RLNDHVQANL SIRSFMRQLT DNDTIYVITT NPEYYSRIDT VRTITVSEDT 60 LREWKGRHGF FWRVKIKAIE HIVKLCPDEH LLYIDSDTVL TGNLEQIRTL LDNGCGMMHL 120 NEGHPGRMKS KSLKMWKKVA GHTYGGITLG RQHDMWNAGV VAIPRDKLRE TVALTLRICD 180 GMLEDDVERV VIEQYSLSIA LYETTVLKPA EDYITHYWGN KGEFNDFAHE FFLKSYMAGR 240 NVEDEVAQLD MEKLMSMPVR IKMSNINRLL TNLINNMFPN KIQTP 285
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q9I688-F1-model_v4 | 1 | 282 | 6 | 352 | 0.7414 |
0.8472 |
| AF-A0A5P3G0V6-F1-model_v4 | 1 | 236 | 1 | 291 | 0.6198 |
0.7692 |
| AF-A0A132Z517-F1-model_v4 | 1 | 280 | 8 | 285 | 0.6113 |
0.6481 |
| AF-E7F0M8-F1-model_v4 | 1 | 262 | 20 | 318 | 0.6054 |
0.7175 |
| AF-A0A132Z6Q5-F1-model_v4 | 1 | 238 | 6 | 282 | 0.6013 |
0.7497 |
| AF-A0A0N4U9B1-F1-model_v4 | 1 | 248 | 36 | 318 | 0.6001 |
0.7404 |
| AF-A0A3P7Q5Y7-F1-model_v4 | 1 | 247 | 28 | 326 | 0.5956 |
0.7438 |
| AF-K7TQY8-F1-model_v4 | 1 | 250 | 45 | 343 | 0.593 |
0.7481 |
| AF-P19817-F1-model_v4 | 1 | 279 | 26 | 329 | 0.5927 |
0.6729 |
| AF-A0A0K0ELX8-F1-model_v4 | 1 | 243 | 62 | 317 | 0.5918 |
0.7414 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A0H3IZ20 | GT14 | 1 | 255 | 6 | 286 | 0.5857 |
0.675 |
| AF-A0A0H3IZ20-F1-model_v4 | GT14 | 1 | 255 | 6 | 286 | 0.5857 |
0.675 |
| AF-A0A0M4LG77-F1-model_v4 | GT9 | 1 | 276 | 388 | 666 | 0.5826 |
0.8472 |
| AF-A0A0B4S577-F1-model_v4 | GT0 | 1 | 239 | 3 | 288 | 0.5823 |
0.7253 |
| AF-A0A1D8P9B9-F1-model_v4 | GT0 | 1 | 233 | 2 | 285 | 0.5511 |
0.7246 |
| AF-A0A410WRV3-F1-model_v4 | GT0 | 1 | 233 | 1 | 282 | 0.5316 |
0.7232 |
| A0A6J5NND2 | GT71 | 1 | 285 | 56 | 413 | 0.5122 |
0.6667 |
| A0A5J6VM96 | GT11 , GT6 | 1 | 261 | 440 | 673 | 0.3917 |
0.7248 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A410QFZ8 | GT8 | 1 | 241 | 1 | 273 | 0.6303 |
0.7468 |
| A0A2K2F6N1 | GT8 | 1 | 239 | 1 | 275 | 0.6235 |
0.7477 |
| A0A3D2LN53 | GT6 | 1 | 266 | 3 | 239 | 0.6222 |
0.7315 |
| A0A2N6UG76 | GT8 | 1 | 241 | 7 | 280 | 0.6184 |
0.7398 |
| A0A0U3F7D2 | GT8 | 1 | 239 | 1 | 277 | 0.6156 |
0.7508 |
| ULQ57420.1 | GT6 | 1 | 226 | 3 | 232 | 0.6149 |
0.7587 |
| L0EAX2 | GT8 | 1 | 241 | 1 | 275 | 0.6098 |
0.7475 |
| A0ZYL4 | GT8 | 1 | 275 | 3 | 279 | 0.6076 |
0.6535 |
| QYN46441.1 | GT8 | 1 | 278 | 14 | 320 | 0.6044 |
0.6825 |
| A0A858XPA7 | GT8 | 1 | 271 | 2 | 290 | 0.6039 |
0.6861 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 4ayj-assembly1.cif.gz_A | 1 | 261 | 3 | 229 | 0.6402 |
0.7443 |
| 7zxw-assembly1.cif.gz_A | 1 | 240 | 10 | 282 | 0.6233 |
0.7517 |
| 5y7f-assembly1.cif.gz_A | 1 | 239 | 3 | 267 | 0.6185 |
0.7302 |
| 6eql-assembly1.cif.gz_B | 1 | 241 | 2 | 224 | 0.6167 |
0.7143 |
| 5h18-assembly1.cif.gz_A | 1 | 240 | 3 | 270 | 0.6166 |
0.7308 |
| 3i0h-assembly1.cif.gz_A-2 | 1 | 261 | 45 | 274 | 0.6067 |
0.7466 |
| 1ga8-assembly1.cif.gz_A | 1 | 242 | 1 | 270 | 0.6051 |
0.7211 |
| 1ss9-assembly1.cif.gz_A | 1 | 238 | 1 | 272 | 0.6023 |
0.7299 |
| 3i0i-assembly1.cif.gz_X-2 | 1 | 261 | 46 | 272 | 0.5997 |
0.7453 |
| 3i0j-assembly1.cif.gz_A-2 | 1 | 261 | 45 | 270 | 0.5996 |
0.7457 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-P19817-F1-model_v4 | 1 | 279 | 26 | 329 | 0.5927 |
0.6729 |
| AF-P19816-F1-model_v4 | 1 | 280 | 28 | 329 | 0.5891 |
0.6696 |
| AF-O31542-F1-model_v4 | 1 | 271 | 4 | 307 | 0.5861 |
0.6595 |
| AF-O06484-F1-model_v4 | 1 | 239 | 3 | 289 | 0.5859 |
0.729 |
| AF-P27128-F1-model_v4 | 1 | 280 | 29 | 331 | 0.5855 |
0.6667 |
| AF-P43974-F1-model_v4 | 1 | 259 | 39 | 326 | 0.5825 |
0.7017 |
| AF-Q640P4-F1-model_v4 | 1 | 275 | 51 | 349 | 0.5704 |
0.6657 |
| AF-Q947G8-F1-model_v4 | 1 | 244 | 20 | 286 | 0.569 |
0.711 |
| AF-Q4R5T7-F1-model_v4 | 1 | 262 | 77 | 305 | 0.5662 |
0.7367 |
| AF-Q5U3H3-F1-model_v4 | 1 | 236 | 65 | 351 | 0.5656 |
0.7681 |