Cluster: HRGMv2_4000_CGC2
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4000
- CGC Family ID: CGCFAM_00048
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4000_3 | HRGMv2_4000_3_8 | 6182 | 7171 | - | CE8 |
| STP | HRGMv2_4000_3 | HRGMv2_4000_3_9 | 7174 | 9444 | - | HD |
| CAZyme | HRGMv2_4000_3 | HRGMv2_4000_3_10 | 9605 | 10930 | - | GH23 |
| pfam | HRGMv2_4000_3 | HRGMv2_4000_3_11 | 11077 | 11817 | - | DUF5683 |
| pfam | HRGMv2_4000_3 | HRGMv2_4000_3_12 | 11860 | 12786 | - | ParBc | HTH_ParB | ParB_dimer |
| TC | HRGMv2_4000_3 | HRGMv2_4000_3_13 | 12891 | 13652 | - | 8.A.3.2.3 |
| NULL(UNKNOWN) | HRGMv2_4000_3 | HRGMv2_4000_3_14 | 13688 | 13834 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4000_3 | HRGMv2_4000_3_15 | 14544 | 15329 | + | SurE |
| CAZyme | HRGMv2_4000_3 | HRGMv2_4000_3_16 | 15358 | 16548 | + | GT19 |
| TC | HRGMv2_4000_3 | HRGMv2_4000_3_17 | 16718 | 17728 | + | 2.A.115.1.2 |
| pfam | HRGMv2_4000_3 | HRGMv2_4000_3_18 | 17901 | 18749 | - | CTP_transf_1 |
| TC | HRGMv2_4000_3 | HRGMv2_4000_3_19 | 18898 | 20916 | - | 3.A.16.1.1 |
| pfam | HRGMv2_4000_3 | HRGMv2_4000_3_20 | 20977 | 21336 | - | RsfS |
| TC | HRGMv2_4000_3 | HRGMv2_4000_3_21 | 21719 | 22723 | - | 3.A.1.13.2 |
Gene ID: HRGMv2_4000_3_8
Type: CAZyme
Location: 6182 - 7171 (-)
Type: CAZyme
Location: 6182 - 7171 (-)
Gene ID: HRGMv2_4000_3_9
Type: STP
Location: 7174 - 9444 (-)
Type: STP
Location: 7174 - 9444 (-)
Gene ID: HRGMv2_4000_3_10
Type: CAZyme
Location: 9605 - 10930 (-)
Type: CAZyme
Location: 9605 - 10930 (-)
Gene ID: HRGMv2_4000_3_11
Type: pfam
Location: 11077 - 11817 (-)
Type: pfam
Location: 11077 - 11817 (-)
Gene ID: HRGMv2_4000_3_12
Type: pfam
Location: 11860 - 12786 (-)
Type: pfam
Location: 11860 - 12786 (-)
Gene ID: HRGMv2_4000_3_13
Type: TC
Location: 12891 - 13652 (-)
Type: TC
Location: 12891 - 13652 (-)
Gene ID: HRGMv2_4000_3_14
Type:
Location: 13688 - 13834 (+)
Type:
Location: 13688 - 13834 (+)
Gene ID: HRGMv2_4000_3_15
Type: pfam
Location: 14544 - 15329 (+)
Type: pfam
Location: 14544 - 15329 (+)
Gene ID: HRGMv2_4000_3_16
Type: CAZyme
Location: 15358 - 16548 (+)
Type: CAZyme
Location: 15358 - 16548 (+)
Gene ID: HRGMv2_4000_3_17
Type: TC
Location: 16718 - 17728 (+)
Type: TC
Location: 16718 - 17728 (+)
Gene ID: HRGMv2_4000_3_18
Type: pfam
Location: 17901 - 18749 (-)
Type: pfam
Location: 17901 - 18749 (-)
Gene ID: HRGMv2_4000_3_19
Type: TC
Location: 18898 - 20916 (-)
Type: TC
Location: 18898 - 20916 (-)
Gene ID: HRGMv2_4000_3_20
Type: pfam
Location: 20977 - 21336 (-)
Type: pfam
Location: 20977 - 21336 (-)
Gene ID: HRGMv2_4000_3_21
Type: TC
Location: 21719 - 22723 (-)
Type: TC
Location: 21719 - 22723 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.