Genome Details
Selected Rep_genome_ID: HRGMv2_2928
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UBA5884
Species
UBA5884 sp018376535
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG213_64_sub | 2,298,622 | 95.3% | 0% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_2928 | 2,353,112 | 96.64% | 0% | UK | Europe | HRGM |
| MGYG000004517 | 2,174,745 | 95.08% | 0.34% | Israel | Asia | UHGG |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_E_16_1654.336 | 1,949,524 | 95.97% | 0% | NA | Africa | Hadza |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2928_CGC19 | CGCFAM_00199 | Yes | 7 | 2 | |
| HRGMv2_2928_CGC18 | CGCFAM_01808 | Yes | 3 | 2 | beta-glucan |
| HRGMv2_2928_CGC9 | CGCFAM_02456 | Yes | 5 | 1 | |
| HRGMv2_2928_CGC15 | CGCFAM_04814 | Yes | 3 | 1 | |
| HRGMv2_2928_CGC1 | CGCFAM_10235 | Yes | 3 | 1 |
Top CAZyme Families