Cluster: HRGMv2_2928_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2928
- CGC Family ID: CGCFAM_00199
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2928_31 | HRGMv2_2928_31_6 | 4791 | 6977 | - | GH36 |
| TC | HRGMv2_2928_31 | HRGMv2_2928_31_7 | 7013 | 7858 | - | 3.A.1.1.28 |
| TC | HRGMv2_2928_31 | HRGMv2_2928_31_8 | 7858 | 8739 | - | 3.A.1.1.28 |
| TC | HRGMv2_2928_31 | HRGMv2_2928_31_9 | 8739 | 10025 | - | 3.A.1.1.28 |
| TF | HRGMv2_2928_31 | HRGMv2_2928_31_10 | 10401 | 11252 | + | HTH_AraC | HTH_AraC |
| TF | HRGMv2_2928_31 | HRGMv2_2928_31_11 | 11287 | 12153 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2928_31 | HRGMv2_2928_31_12 | 12282 | 14264 | + | GH31_1 |
Gene ID: HRGMv2_2928_31_6
Type: CAZyme
Location: 4791 - 6977 (-)
Type: CAZyme
Location: 4791 - 6977 (-)
Gene ID: HRGMv2_2928_31_7
Type: TC
Location: 7013 - 7858 (-)
Type: TC
Location: 7013 - 7858 (-)
Gene ID: HRGMv2_2928_31_8
Type: TC
Location: 7858 - 8739 (-)
Type: TC
Location: 7858 - 8739 (-)
Gene ID: HRGMv2_2928_31_9
Type: TC
Location: 8739 - 10025 (-)
Type: TC
Location: 8739 - 10025 (-)
Gene ID: HRGMv2_2928_31_10
Type: TF
Location: 10401 - 11252 (+)
Type: TF
Location: 10401 - 11252 (+)
Gene ID: HRGMv2_2928_31_11
Type: TF
Location: 11287 - 12153 (-)
Type: TF
Location: 11287 - 12153 (-)
Gene ID: HRGMv2_2928_31_12
Type: CAZyme
Location: 12282 - 14264 (+)
Type: CAZyme
Location: 12282 - 14264 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UBA5884
Species
UBA5884 sp018376535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.