Genome Details
Selected Rep_genome_ID: HRGMv2_2493
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Species
Limosilactobacillus sp012843675
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_2493 | 1,813,544 | 99.18% | 0% | Japan | Asia | HRGM |
| MGYG000004861 | 2,071,723 | 97.9% | 0.54% | China | Asia | UHGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2493_CGC6 | CGCFAM_00004 | Yes | 7 | 4 | alpha-glucan |
| HRGMv2_2493_CGC16 | CGCFAM_00348 | Yes | 8 | 4 | |
| HRGMv2_2493_CGC13 | CGCFAM_00456 | Yes | 10 | 2 | |
| HRGMv2_2493_CGC2 | CGCFAM_00769 | Yes | 7 | 2 | |
| HRGMv2_2493_CGC7 | CGCFAM_02442 | Yes | 3 | 1 | |
| HRGMv2_2493_CGC1 | CGCFAM_02443 | Yes | 3 | 1 | |
| HRGMv2_2493_CGC11 | CGCFAM_04480 | Yes | 4 | 1 | |
| HRGMv2_2493_CGC12 | CGCFAM_06825 | Yes | 4 | 1 | |
| HRGMv2_2493_CGC14 | CGCFAM_06827 | Yes | 5 | 1 | |
| HRGMv2_2493_CGC10 | CGCFAM_06828 | Yes | 12 | 1 |
Top CAZyme Families