Genome Details
Selected Rep_genome_ID: HRGMv2_0366
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp022782405
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_0366 | 2,496,508 | 99.51% | 1.201% | South Korea | Asia | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0366_CGC5 | CGCFAM_00001 | Yes | 6 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| HRGMv2_0366_CGC30 | CGCFAM_00128 | Yes | 8 | 4 | |
| HRGMv2_0366_CGC22 | CGCFAM_00241 | Yes | 11 | 7 | |
| HRGMv2_0366_CGC28 | CGCFAM_00441 | Yes | 6 | 2 | |
| HRGMv2_0366_CGC7 | CGCFAM_00475 | Yes | 17 | 3 | |
| HRGMv2_0366_CGC19 | CGCFAM_00511 | Yes | 6 | 2 | |
| HRGMv2_0366_CGC9 | CGCFAM_00543 | Yes | 3 | 1 | |
| HRGMv2_0366_CGC12 | CGCFAM_00607 | Yes | 18 | 1 | |
| HRGMv2_0366_CGC27 | CGCFAM_00654 | Yes | 5 | 2 | |
| HRGMv2_0366_CGC10 | CGCFAM_00734 | Yes | 6 | 1 | |
| HRGMv2_0366_CGC3 | CGCFAM_00941 | Yes | 4 | 2 | |
| HRGMv2_0366_CGC23 | CGCFAM_03998 | Yes | 15 | 7 | |
| HRGMv2_0366_CGC17 | CGCFAM_05517 | Yes | 7 | 1 | |
| HRGMv2_0366_CGC20 | CGCFAM_05992 | Yes | 6 | 2 | |
| HRGMv2_0366_CGC24 | CGCFAM_06496 | Yes | 7 | 3 | |
| HRGMv2_0366_CGC16 | CGCFAM_07381 | Yes | 3 | 1 | |
| HRGMv2_0366_CGC8 | CGCFAM_09635 | Yes | 6 | 1 |
Top CAZyme Families