Cluster: HRGMv2_0366_CGC23
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0366
- CGC Family ID: CGCFAM_03998
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0366_5 | HRGMv2_0366_5_111 | 144073 | 145104 | + | GH130_4 |
| pfam | HRGMv2_0366_5 | HRGMv2_0366_5_112 | 145136 | 146809 | + | GxGYxYP_C | GxGYxYP_N | GxGYxYP_N_2nd | GxGYxYP_N_3rd |
| TC | HRGMv2_0366_5 | HRGMv2_0366_5_113 | 146936 | 149965 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0366_5 | HRGMv2_0366_5_114 | 149987 | 151801 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0366_5 | HRGMv2_0366_5_115 | 152030 | 152749 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0366_5 | HRGMv2_0366_5_116 | 152839 | 154788 | + | CE20 | CE20 |
| TF | HRGMv2_0366_5 | HRGMv2_0366_5_117 | 154843 | 158868 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_0366_5 | HRGMv2_0366_5_118 | 158978 | 160261 | + | 2.A.1.33.2 |
| pfam | HRGMv2_0366_5 | HRGMv2_0366_5_119 | 160530 | 161909 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0366_5 | HRGMv2_0366_5_120 | 161936 | 164104 | - | GH92 |
| CAZyme | HRGMv2_0366_5 | HRGMv2_0366_5_121 | 164115 | 166439 | - | GH92 |
| CAZyme | HRGMv2_0366_5 | HRGMv2_0366_5_122 | 166479 | 168833 | - | GH92 |
| CAZyme | HRGMv2_0366_5 | HRGMv2_0366_5_123 | 168842 | 171466 | - | GH38 |
| pfam | HRGMv2_0366_5 | HRGMv2_0366_5_124 | 171647 | 173269 | - | DUF6377 |
| CAZyme | HRGMv2_0366_5 | HRGMv2_0366_5_125 | 173553 | 175568 | + | GH2 |
Gene ID: HRGMv2_0366_5_111
Type: CAZyme
Location: 144073 - 145104 (+)
Type: CAZyme
Location: 144073 - 145104 (+)
Gene ID: HRGMv2_0366_5_112
Type: pfam
Location: 145136 - 146809 (+)
Type: pfam
Location: 145136 - 146809 (+)
Gene ID: HRGMv2_0366_5_113
Type: TC
Location: 146936 - 149965 (+)
Type: TC
Location: 146936 - 149965 (+)
Gene ID: HRGMv2_0366_5_114
Type: pfam
Location: 149987 - 151801 (+)
Type: pfam
Location: 149987 - 151801 (+)
Gene ID: HRGMv2_0366_5_115
Type: pfam
Location: 152030 - 152749 (+)
Type: pfam
Location: 152030 - 152749 (+)
Gene ID: HRGMv2_0366_5_116
Type: CAZyme
Location: 152839 - 154788 (+)
Type: CAZyme
Location: 152839 - 154788 (+)
Gene ID: HRGMv2_0366_5_117
Type: TF
Location: 154843 - 158868 (+)
Type: TF
Location: 154843 - 158868 (+)
Gene ID: HRGMv2_0366_5_118
Type: TC
Location: 158978 - 160261 (+)
Type: TC
Location: 158978 - 160261 (+)
Gene ID: HRGMv2_0366_5_119
Type: pfam
Location: 160530 - 161909 (-)
Type: pfam
Location: 160530 - 161909 (-)
Gene ID: HRGMv2_0366_5_120
Type: CAZyme
Location: 161936 - 164104 (-)
Type: CAZyme
Location: 161936 - 164104 (-)
Gene ID: HRGMv2_0366_5_121
Type: CAZyme
Location: 164115 - 166439 (-)
Type: CAZyme
Location: 164115 - 166439 (-)
Gene ID: HRGMv2_0366_5_122
Type: CAZyme
Location: 166479 - 168833 (-)
Type: CAZyme
Location: 166479 - 168833 (-)
Gene ID: HRGMv2_0366_5_123
Type: CAZyme
Location: 168842 - 171466 (-)
Type: CAZyme
Location: 168842 - 171466 (-)
Gene ID: HRGMv2_0366_5_124
Type: pfam
Location: 171647 - 173269 (-)
Type: pfam
Location: 171647 - 173269 (-)
Gene ID: HRGMv2_0366_5_125
Type: CAZyme
Location: 173553 - 175568 (+)
Type: CAZyme
Location: 173553 - 175568 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp022782405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0366_5_120 | vegetarian > vegan | 1.01351 | 0.01011 |
| HRGMv2_0366_5_121 | vegetarian > vegan | 1.18785 | 0.01011 |
| HRGMv2_0366_5_122 | vegetarian > vegan | 1.05178 | 0.01011 |