Genome Details
Selected Rep_genome_ID: C46.CMAG_3
Total Genomes Found: 37
Total Genomes Found: 37
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_D
Species
Ruminococcus_D sp934435205
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG504_bin.17 | 2,894,615 | 98.63% | 0% | NA | Africa | H3AfricaPhase2 |
| C46.CMAG_3 | 3,273,049 | 99.32% | 0% | China(Inner Mongolia) | Asia | IMGG |
| CGMR017725 | 2,405,633 | 98.63% | 0% | China | Asia | CGMR |
| GCA_021620045.1_ASM2162004v1_genomic | 2,341,974 | 91.1% | 1.54% | NA | Africa | H3AfricaPhase1 |
| GCA_021620425.1_ASM2162042v1_genomic | 2,340,358 | 92.29% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021625425.1_ASM2162542v1_genomic | 2,633,590 | 97.6% | 0% | NA | Africa | H3AfricaPhase1 |
| GCF_021615135.1_ASM2161513v1_genomic | 2,857,756 | 98.63% | 0% | NA | Africa | H3AfricaPhase1 |
| GCF_021618045.1_ASM2161804v1_genomic | 2,442,547 | 95.21% | 0.34% | NA | Africa | H3AfricaPhase1 |
| GCF_021620365.1_ASM2162036v1_genomic | 2,385,368 | 91.44% | 1.26% | NA | Africa | H3AfricaPhase1 |
| GCF_021621625.1_ASM2162162v1_genomic | 2,425,867 | 93.15% | 0% | NA | Africa | H3AfricaPhase1 |
| GCF_021621905.1_ASM2162190v1_genomic | 2,408,030 | 96.58% | 0% | NA | Africa | H3AfricaPhase1 |
| GCF_021636845.1_ASM2163684v1_genomic | 2,520,618 | 98.63% | 0% | NA | Africa | H3AfricaPhase1 |
| HRGMv2_2719 | 2,572,698 | 99.31% | 0% | China | Asia | HRGM |
| Rep_3491 | 2,970,345 | 99.3151% | 0% | NA | NA | WIS |
| SPMP13_bin.59 | 2,738,691 | 96.58% | 0% | Singapore | Asia | SPMP |
| SPMP16_bin.105 | 2,551,787 | 97.26% | 0% | Singapore | Asia | SPMP |
| SPMP20_bin.43 | 2,573,387 | 93.02% | 1.37% | Singapore | Asia | SPMP |
| SPMP23_bin.56 | 2,598,694 | 97.72% | 0% | Singapore | Asia | SPMP |
| SPMP25_bin.93 | 2,201,178 | 92.47% | 0% | Singapore | Asia | SPMP |
| SPMP28_bin.130 | 2,885,672 | 94.18% | 1.37% | Singapore | Asia | SPMP |
| SPMP30_bin.178 | 2,740,877 | 97.26% | 0.68% | Singapore | Asia | SPMP |
| SPMP34_bin.50 | 2,629,932 | 96.92% | 0% | Singapore | Asia | SPMP |
| SPMP35_bin.79 | 2,575,578 | 93.96% | 1.37% | Singapore | Asia | SPMP |
| SPMP38_bin.88 | 2,764,591 | 97.37% | 0% | Singapore | Asia | SPMP |
| SPMP40_bin.16 | 2,862,160 | 94.52% | 0% | Singapore | Asia | SPMP |
| SPMP41_bin.46 | 2,577,649 | 96.92% | 0% | Singapore | Asia | SPMP |
| SPMP45_bin.1 | 2,976,353 | 99.32% | 0% | Singapore | Asia | SPMP |
| SPMP48_bin.147 | 2,776,317 | 98.63% | 0% | Singapore | Asia | SPMP |
| SPMP49_bin.74 | 2,751,408 | 90.75% | 0% | Singapore | Asia | SPMP |
| SPMP71_bin.18 | 2,546,992 | 96.58% | 0% | Singapore | Asia | SPMP |
| SPMP76_bin.65 | 2,519,417 | 95.89% | 0% | Singapore | Asia | SPMP |
| SPMP82_bin.77 | 2,741,025 | 96.55% | 1.37% | Singapore | Asia | SPMP |
| SPMP84_bin.1 | 2,962,910 | 98.29% | 0% | Singapore | Asia | SPMP |
| SPMP88_bin.23 | 2,629,294 | 97.95% | 0% | Singapore | Asia | SPMP |
| SPMP89_bin.107 | 2,740,462 | 95.89% | 2.28% | Singapore | Asia | SPMP |
| SPMP99_bin.89 | 2,888,333 | 98.63% | 0% | Singapore | Asia | SPMP |
| SW027_bin.14 | 2,486,097 | 99.32% | 0% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| C46.CMAG_3_CGC6 | CGCFAM_00040 | Yes | 5 | 1 | |
| C46.CMAG_3_CGC4 | CGCFAM_00074 | Yes | 4 | 1 | |
| C46.CMAG_3_CGC17 | CGCFAM_02089 | Yes | 5 | 1 | |
| C46.CMAG_3_CGC24 | CGCFAM_02629 | Yes | 5 | 1 | |
| C46.CMAG_3_CGC9 | CGCFAM_03454 | Yes | 7 | 3 | |
| C46.CMAG_3_CGC19 | CGCFAM_05249 | Yes | 7 | 2 | |
| C46.CMAG_3_CGC7 | CGCFAM_05250 | Yes | 12 | 2 | |
| C46.CMAG_3_CGC27 | CGCFAM_07530 | Yes | 3 | 2 | |
| C46.CMAG_3_CGC10 | CGCFAM_07996 | Yes | 4 | 1 | |
| C46.CMAG_3_CGC11 | CGCFAM_07997 | Yes | 7 | 1 | |
| C46.CMAG_3_CGC13 | CGCFAM_07998 | Yes | 5 | 1 | |
| C46.CMAG_3_CGC20 | CGCFAM_07999 | Yes | 12 | 1 | |
| C46.CMAG_3_CGC26 | CGCFAM_08000 | Yes | 7 | 2 |
Top CAZyme Families