Cluster: HRGMv2_4186_CGC30
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4186
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4186_61 | HRGMv2_4186_61_1 | 374 | 1510 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_4186_61 | HRGMv2_4186_61_2 | 1507 | 2856 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4186_61 | HRGMv2_4186_61_3 | 2853 | 4175 | + | Wzy_C |
| CAZyme | HRGMv2_4186_61 | HRGMv2_4186_61_4 | 4176 | 5282 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_4186_61 | HRGMv2_4186_61_5 | 5378 | 5728 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4186_61 | HRGMv2_4186_61_6 | 5728 | 7167 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4186_61 | HRGMv2_4186_61_7 | 7171 | 8241 | + | GT4 |
| CAZyme | HRGMv2_4186_61 | HRGMv2_4186_61_8 | 8238 | 10016 | + | GT2 |
| STP | HRGMv2_4186_61 | HRGMv2_4186_61_9 | 10074 | 10382 | + | STAS |
| pfam | HRGMv2_4186_61 | HRGMv2_4186_61_10 | 10379 | 11164 | + | OmpA |
| TC | HRGMv2_4186_61 | HRGMv2_4186_61_11 | 11161 | 13839 | + | 1.B.18.1.2 |
| NULL(UNKNOWN) | HRGMv2_4186_61 | HRGMv2_4186_61_12 | 13839 | 14522 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_4186_61 | HRGMv2_4186_61_13 | 14519 | 15991 | + | Response_reg | SpoIIE |
| CAZyme | HRGMv2_4186_61 | HRGMv2_4186_61_14 | 15965 | 16939 | - | GT4 |
Gene ID: HRGMv2_4186_61_1
Type: CAZyme
Location: 374 - 1510 (+)
Type: CAZyme
Location: 374 - 1510 (+)
Gene ID: HRGMv2_4186_61_2
Type:
Location: 1507 - 2856 (+)
Type:
Location: 1507 - 2856 (+)
Gene ID: HRGMv2_4186_61_3
Type: pfam
Location: 2853 - 4175 (+)
Type: pfam
Location: 2853 - 4175 (+)
Gene ID: HRGMv2_4186_61_4
Type: CAZyme
Location: 4176 - 5282 (+)
Type: CAZyme
Location: 4176 - 5282 (+)
Gene ID: HRGMv2_4186_61_5
Type:
Location: 5378 - 5728 (+)
Type:
Location: 5378 - 5728 (+)
Gene ID: HRGMv2_4186_61_6
Type:
Location: 5728 - 7167 (+)
Type:
Location: 5728 - 7167 (+)
Gene ID: HRGMv2_4186_61_7
Type: CAZyme
Location: 7171 - 8241 (+)
Type: CAZyme
Location: 7171 - 8241 (+)
Gene ID: HRGMv2_4186_61_8
Type: CAZyme
Location: 8238 - 10016 (+)
Type: CAZyme
Location: 8238 - 10016 (+)
Gene ID: HRGMv2_4186_61_9
Type: STP
Location: 10074 - 10382 (+)
Type: STP
Location: 10074 - 10382 (+)
Gene ID: HRGMv2_4186_61_10
Type: pfam
Location: 10379 - 11164 (+)
Type: pfam
Location: 10379 - 11164 (+)
Gene ID: HRGMv2_4186_61_11
Type: TC
Location: 11161 - 13839 (+)
Type: TC
Location: 11161 - 13839 (+)
Gene ID: HRGMv2_4186_61_12
Type:
Location: 13839 - 14522 (+)
Type:
Location: 13839 - 14522 (+)
Gene ID: HRGMv2_4186_61_13
Type: STP
Location: 14519 - 15991 (+)
Type: STP
Location: 14519 - 15991 (+)
Gene ID: HRGMv2_4186_61_14
Type: CAZyme
Location: 15965 - 16939 (-)
Type: CAZyme
Location: 15965 - 16939 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Photobacterium
Species
Photobacterium damselae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.