y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10000664m |
Family | GT8 |
Protein Properties | Length: 591 Molecular Weight: 68547.5 Isoelectric Point: 8.7098 |
Chromosome | Chromosome/Scaffold: 5 Start: 32783457 End: 32786240 |
Description | plant glycogenin-like starch initiation protein 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 284 | 506 | 1.4013e-44 |
YFMSQARLAKLNYTTYHQREAYVTVLHSSEAYVCGAIALAQSIIQKNSTRDLVLLHDKSISGKSLRGLRAAGWKTKWISRIRSPFAKKDSYNEWNYSKLR VWQLIEYDKIIFIDSDLLVLKNIDEFFFYPELSAAGNDKVLFNSGVMVIEPSLCKFEDMMLKSFKVSSYNGGDQGFLNEVFTWWHRLPKKINHLKVFSKQ DDKEHQVGDGLYAIHYLGLKPWM |
Full Sequence |
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Protein Sequence Length: 591 Download |
MSTQNKSFNF QQRREAKFNQ MAAASSSSSS NKPTNFSQKL FIISLLLLSF SLFLVVLSFK 60 PKQQPHLAYE PNDKYNTNHL LHRPKWLDIV EKHINGHKIK VGLVNINDDD DDDYNSVRGD 120 LHVETVHVRF DHVGEDKKWE DFFPEWIDED HKWAPPACPE IPMPAQDYPY LDVIVARVPC 180 RGDGDAGGGM RDVFRLQVNL VVANLAVESG WLKPDVDRPV YVVFVGSCGA MVEMFRCDDL 240 VEHAGDYWVY KPDLRRLKHK VLMPVGSCQI ASAFAQTGKE IWRYFMSQAR LAKLNYTTYH 300 QREAYVTVLH SSEAYVCGAI ALAQSIIQKN STRDLVLLHD KSISGKSLRG LRAAGWKTKW 360 ISRIRSPFAK KDSYNEWNYS KLRVWQLIEY DKIIFIDSDL LVLKNIDEFF FYPELSAAGN 420 DKVLFNSGVM VIEPSLCKFE DMMLKSFKVS SYNGGDQGFL NEVFTWWHRL PKKINHLKVF 480 SKQDDKEHQV GDGLYAIHYL GLKPWMCYKD YDCNWDMVSR HIFASDSAHN EWWQVYDAMP 540 KKLQQYCALT KHIDKRIKKW RRIAENANLA NGHWKIKPKD PRQYHIVDNK * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5597 | COG5597 | 9.0e-12 | 373 | 539 | 194 | + Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | ||
PLN00176 | PLN00176 | 3.0e-12 | 302 | 537 | 302 | + galactinol synthase | ||
cd06914 | GT8_GNT1 | 1.0e-13 | 304 | 443 | 148 | + GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases. | ||
pfam01501 | Glyco_transf_8 | 5.0e-35 | 306 | 505 | 244 | + Glycosyl transferase family 8. This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. | ||
cd02537 | GT8_Glycogenin | 7.0e-69 | 303 | 539 | 247 | + Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABR67414.1 | 0 | 99 | 589 | 108 | 611 | glycosyl transferase [Cucumis melo] |
EMBL | CAN81983.1 | 0 | 81 | 588 | 43 | 545 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_175891.1 | 0 | 71 | 587 | 49 | 555 | PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002280832.1 | 0 | 81 | 588 | 43 | 545 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002328440.1 | 0 | 163 | 588 | 1 | 430 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u2w_B | 1e-20 | 303 | 536 | 5 | 254 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A Resolution |
PDB | 3u2w_A | 1e-20 | 303 | 536 | 5 | 254 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A Resolution |
PDB | 3qvb_A | 1e-20 | 303 | 536 | 5 | 254 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A Resolution |
PDB | 3q4s_A | 1e-20 | 303 | 536 | 5 | 254 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form |
PDB | 3u2x_B | 4e-20 | 303 | 536 | 5 | 254 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form |