y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10021810m |
Family | GT8 |
Protein Properties | Length: 560 Molecular Weight: 64750.9 Isoelectric Point: 9.3193 |
Chromosome | Chromosome/Scaffold: 2 Start: 4026277 End: 4028960 |
Description | plant glycogenin-like starch initiation protein 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 269 | 476 | 4.9e-39 |
RRLRVAYVTVLHSSEAYVCGAIALAQSIRQSGSHKDMILLHDHTITNRSLIGLSAAGWNLRLIDRIRSPFSKKDSYNEWNYSKLRVWQVTDYDKLVFIDA DFIILKKLDHLFYYPQLSASGNDKVLFNSGIMVLEPSECMFKDLMEKSFKIESYNGGDQGFLNEIFVWWHRLPKRVNTMKYFDEKSQRTHDLPENLEGVH YLGLKPWV |
Full Sequence |
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Protein Sequence Length: 560 Download |
MGAKTHNSRG KIFMIYLILI SLSLFGLILP FKPLLKITSP SSTLRINLPS PQVSQNPKWL 60 RLVRDYLPGK KIQVGFLNLE EKERESYEAR GPSILKNVHV SLDPLPENVT WKSLYPEWIN 120 EEVSNCPEIP LPKLQGSDVD VDVIVARVPC DGWSENKGVR DVFRLQVNLA VANLAVQSGM 180 AMGRVDATVY VVFIGSCGPM HEIFKCDERV RRVDDYWVYK PYIPRLKQKL LMPVGSCRIA 240 PPFAQFGQEA WRPKTDVKLA SEASIALPRR LRVAYVTVLH SSEAYVCGAI ALAQSIRQSG 300 SHKDMILLHD HTITNRSLIG LSAAGWNLRL IDRIRSPFSK KDSYNEWNYS KLRVWQVTDY 360 DKLVFIDADF IILKKLDHLF YYPQLSASGN DKVLFNSGIM VLEPSECMFK DLMEKSFKIE 420 SYNGGDQGFL NEIFVWWHRL PKRVNTMKYF DEKSQRTHDL PENLEGVHYL GLKPWVCYRD 480 YDCNWDMSAR RVFASDSVHE KWWKVYDKMS DQLKGYCGLN KNMEKRIEKW RRIAENSSLP 540 DRHWEIEVRD PRKKNLLVQ* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00505 | Glyco_transf_8 | 9.0e-9 | 274 | 476 | 248 | + Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+. | ||
PLN00176 | PLN00176 | 2.0e-14 | 253 | 515 | 328 | + galactinol synthase | ||
cd06914 | GT8_GNT1 | 1.0e-15 | 274 | 434 | 172 | + GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases. | ||
pfam01501 | Glyco_transf_8 | 8.0e-40 | 276 | 478 | 247 | + Glycosyl transferase family 8. This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. | ||
cd02537 | GT8_Glycogenin | 3.0e-68 | 273 | 509 | 247 | + Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB70408.1 | 0 | 1 | 559 | 1 | 546 | F7G19.14 [Arabidopsis thaliana] |
EMBL | CAN81983.1 | 0 | 55 | 557 | 44 | 544 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_172373.3 | 0 | 1 | 559 | 1 | 566 | PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | NP_175891.1 | 0 | 1 | 559 | 1 | 557 | PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002280832.1 | 0 | 55 | 557 | 44 | 544 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u2x_B | 2e-16 | 274 | 475 | 6 | 221 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3u2x_A | 2e-16 | 274 | 475 | 6 | 221 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3u2v_B | 2e-16 | 274 | 475 | 6 | 221 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3u2v_A | 2e-16 | 274 | 475 | 6 | 221 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3u2u_B | 2e-16 | 274 | 475 | 6 | 221 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |