y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra037570 |
Family | GT8 |
Protein Properties | Length: 661 Molecular Weight: 76242.1 Isoelectric Point: 8.0083 |
Chromosome | Chromosome/Scaffold: 01 Start: 22013987 End: 22017166 |
Description | plant glycogenin-like starch initiation protein 1 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 324 | 533 | 3.50002e-41 |
ATILHSAHVYVCGAIAAAQSIRQSGSTRDLVILVDDNISGYHRSGLEAAGWQIRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRN IDFLFSMPEISATGNNGTLFNSGVMVIEPCNCTFELLMEHINEIESYNGGDQGYLNEVFTWWHRIPKHMNFLKHFWVGDEDDVRRKKTELFGAEPPILYV LHYLGMKPWL |
Full Sequence |
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Protein Sequence Length: 661 Download |
MANPPAATAA TAATGGDSRR RLSASIEAIC KRRFRRSSKG GGRPDMVKPF NIINFPTGDK 60 NSNCCCSKFQ IVKILLFILL LATLFTIIYS PEVYHHSLSH SSSRWIWRRQ DSRYVSDLDI 120 NWDDVTKTLE SVQEGRTIGV LNFNSNEIQR WRELAKTKDN EEEENVVVLD LDYADKNVTW 180 ESLYPEWIDE EQETEVPVCP DLPKIKVPTR RLDLIVVKLP CRKEGNWSRD VGRLHLQLAA 240 ATVAAAAKGF FRGHVLFVSR CFPIPNLFRC KDLVARRGDV WLYKPNLDTL RDKLQLPIGS 300 CELSLPLGIK ERPSLGNPKR EAYATILHSA HVYVCGAIAA AQSIRQSGST RDLVILVDDN 360 ISGYHRSGLE AAGWQIRTIQ RIRNPKAEKD AYNEWNYSKF RLWQLTDYDK IIFIDADLLI 420 LRNIDFLFSM PEISATGNNG TLFNSGVMVI EPCNCTFELL MEHINEIESY NGGDQGYLNE 480 VFTWWHRIPK HMNFLKHFWV GDEDDVRRKK TELFGAEPPI LYVLHYLGMK PWLCYRDYDC 540 NFNSDIFVEF ATDIAHRRWW MVHDAMPKEL HQFCYLRSKQ KAQLEYDRRQ AEAANYTDGH 600 WKIKVKDPRF KICIDKLCNW KSMLRHWGES NSNWTDDESF VPTPPAITAV RRSSLPGHNL 660 * 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00505 | Glyco_transf_8 | 1.0e-11 | 326 | 532 | 245 | + Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+. | ||
cd06914 | GT8_GNT1 | 3.0e-15 | 333 | 483 | 164 | + GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases. | ||
PLN00176 | PLN00176 | 4.0e-16 | 302 | 532 | 275 | + galactinol synthase | ||
pfam01501 | Glyco_transf_8 | 6.0e-43 | 324 | 535 | 256 | + Glycosyl transferase family 8. This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. | ||
cd02537 | GT8_Glycogenin | 7.0e-72 | 321 | 566 | 256 | + Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33317.1 | 0 | 1 | 657 | 1 | 635 | secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] |
RefSeq | NP_001030722.1 | 0 | 1 | 660 | 1 | 659 | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | NP_566615.1 | 0 | 1 | 660 | 1 | 655 | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002310513.1 | 0 | 17 | 657 | 9 | 629 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517237.1 | 0 | 12 | 657 | 8 | 629 | glycogenin, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u2x_B | 1e-21 | 321 | 532 | 5 | 221 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
PDB | 3u2x_A | 1e-21 | 321 | 532 | 5 | 221 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
PDB | 3u2v_B | 1e-21 | 321 | 532 | 5 | 221 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
PDB | 3u2v_A | 1e-21 | 321 | 532 | 5 | 221 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
PDB | 3u2u_B | 1e-21 | 321 | 532 | 5 | 221 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |