Genome Details
Selected Rep_genome_ID: Rep_790
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Vibrio
Species
Vibrio cholerae
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| GCA_021630565.1_ASM2163056v1_genomic | 3,480,375 | 95.1% | 0.45% | NA | Africa | H3AfricaPhase1 |
| Rep_790 | 3,875,075 | 98.916% | 0.0271003% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_790_CGC21 | CGCFAM_00003 | Yes | 6 | 1 | |
| Rep_790_CGC18 | CGCFAM_00578 | Yes | 3 | 1 | |
| Rep_790_CGC24 | CGCFAM_01988 | Yes | 3 | 1 | |
| Rep_790_CGC6 | CGCFAM_02090 | Yes | 10 | 1 | |
| Rep_790_CGC1 | CGCFAM_02712 | Yes | 4 | 1 | |
| Rep_790_CGC22 | CGCFAM_04153 | Yes | 17 | 3 | chitin |
| Rep_790_CGC4 | CGCFAM_10549 | Yes | 4 | 1 |
Top CAZyme Families