Cluster: Rep_790_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_790
- CGC Family ID: CGCFAM_02712
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_790_c_0 | Rep_790_c_0_45 | 57956 | 59641 | - | 4.C.1.1.14 |
| TC | Rep_790_c_0 | Rep_790_c_0_46 | 59847 | 61001 | - | 8.A.59.4.2 |
| pfam | Rep_790_c_0 | Rep_790_c_0_47 | 61137 | 62279 | - | Chromate_transp | Chromate_transp |
| CAZyme | Rep_790_c_0 | Rep_790_c_0_48 | 62662 | 65736 | + | GH2 |
Gene ID: Rep_790_c_0_45
Type: TC
Location: 57956 - 59641 (-)
Type: TC
Location: 57956 - 59641 (-)
Gene ID: Rep_790_c_0_46
Type: TC
Location: 59847 - 61001 (-)
Type: TC
Location: 59847 - 61001 (-)
Gene ID: Rep_790_c_0_47
Type: pfam
Location: 61137 - 62279 (-)
Type: pfam
Location: 61137 - 62279 (-)
Gene ID: Rep_790_c_0_48
Type: CAZyme
Location: 62662 - 65736 (+)
Type: CAZyme
Location: 62662 - 65736 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Vibrio
Species
Vibrio cholerae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.