Genome Details
Selected Rep_genome_ID: HRGMv2_1681
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp003479805
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR025378 | 1,889,935 | 95.59% | 0.08% | China | Asia | CGMR |
| HRGMv2_1681 | 2,096,089 | 100% | 0% | Japan | Asia | HRGM |
| Rep_2925 | 2,049,160 | 100% | 0.806452% | NA | NA | WIS |
| SPMP02_bin.41 | 2,009,198 | 98.3% | 3.23% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_1681_CGC18 | CGCFAM_00002 | Yes | 6 | 2 | |
| HRGMv2_1681_CGC7 | CGCFAM_00014 | Yes | 8 | 2 | host glycan |
| HRGMv2_1681_CGC1 | CGCFAM_00040 | Yes | 6 | 3 | |
| HRGMv2_1681_CGC12 | CGCFAM_00131 | Yes | 4 | 1 | |
| HRGMv2_1681_CGC6 | CGCFAM_00131 | Yes | 5 | 2 | |
| HRGMv2_1681_CGC11 | CGCFAM_00289 | Yes | 6 | 2 | |
| HRGMv2_1681_CGC4 | CGCFAM_00309 | Yes | 4 | 1 | |
| HRGMv2_1681_CGC3 | CGCFAM_00382 | Yes | 4 | 3 | |
| HRGMv2_1681_CGC10 | CGCFAM_02522 | Yes | 5 | 1 | |
| HRGMv2_1681_CGC9 | CGCFAM_02566 | Yes | 5 | 1 | |
| HRGMv2_1681_CGC8 | CGCFAM_04519 | Yes | 17 | 1 | |
| HRGMv2_1681_CGC19 | CGCFAM_05447 | Yes | 7 | 2 | |
| HRGMv2_1681_CGC21 | CGCFAM_08031 | Yes | 3 | 1 |
Top CAZyme Families