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Cluster: HRGMv2_1681_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1681_12 HRGMv2_1681_12_55 55745 57250 - GH1
pfam HRGMv2_1681_12 HRGMv2_1681_12_56 57244 58152 - GKRP_SIS_2 | GKRP_SIS_N
TC HRGMv2_1681_12 HRGMv2_1681_12_57 58167 58502 - 4.A.3.2.7
TF HRGMv2_1681_12 HRGMv2_1681_12_58 58902 59747 + HTH_6
TC HRGMv2_1681_12 HRGMv2_1681_12_59 59760 60062 + 4.A.3.2.6
TC HRGMv2_1681_12 HRGMv2_1681_12_60 60117 61430 + 4.A.3.2.6
CAZyme HRGMv2_1681_12 HRGMv2_1681_12_61 61560 62654 + GH170
Gene ID: HRGMv2_1681_12_55
Type: CAZyme
Location: 55745 - 57250 (-)
Gene ID: HRGMv2_1681_12_56
Type: pfam
Location: 57244 - 58152 (-)
Gene ID: HRGMv2_1681_12_57
Type: TC
Location: 58167 - 58502 (-)
Gene ID: HRGMv2_1681_12_58
Type: TF
Location: 58902 - 59747 (+)
Gene ID: HRGMv2_1681_12_59
Type: TC
Location: 59760 - 60062 (+)
Gene ID: HRGMv2_1681_12_60
Type: TC
Location: 60117 - 61430 (+)
Gene ID: HRGMv2_1681_12_61
Type: CAZyme
Location: 61560 - 62654 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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