Genome Details
Selected Rep_genome_ID: HRGMv2_0242
Total Genomes Found: 7
Total Genomes Found: 7
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp002265625
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR081642 | 2,939,855 | 98.03% | 0.86% | China | Asia | CGMR |
| GCF_021630235.1_ASM2163023v1_genomic | 2,965,249 | 97.82% | 0.12% | NA | Africa | H3AfricaPhase1 |
| GCF_021639025.1_ASM2163902v1_genomic | 2,875,521 | 95.56% | 0.08% | NA | Africa | H3AfricaPhase1 |
| HRGMv2_0242 | 3,473,375 | 99.53% | 0% | India | Asia | HRGM |
| KY214_49 | 3,257,244 | 99.54% | 0.12% | NA | Africa | H3AfricaPhase2 |
| MGYG000004390 | 3,321,071 | 99.54% | 0.12% | Israel | Asia | UHGG |
| Rep_214 | 3,493,487 | 96.2037% | 0.617284% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0242_CGC16 | CGCFAM_00043 | Yes | 6 | 3 | alpha-glucan |
| HRGMv2_0242_CGC26 | CGCFAM_00180 | Yes | 6 | 2 | |
| HRGMv2_0242_CGC20 | CGCFAM_00217 | Yes | 21 | 11 | |
| HRGMv2_0242_CGC1 | CGCFAM_00240 | Yes | 4 | 1 | fructan |
| HRGMv2_0242_CGC29 | CGCFAM_00480 | Yes | 5 | 3 | pectin/host glycan |
| HRGMv2_0242_CGC33 | CGCFAM_00548 | Yes | 8 | 4 | |
| HRGMv2_0242_CGC21 | CGCFAM_00604 | Yes | 17 | 1 | |
| HRGMv2_0242_CGC6 | CGCFAM_04154 | Yes | 7 | 5 | |
| HRGMv2_0242_CGC28 | CGCFAM_04253 | Yes | 8 | 2 | |
| HRGMv2_0242_CGC30 | CGCFAM_04971 | Yes | 5 | 1 | |
| HRGMv2_0242_CGC34 | CGCFAM_05094 | Yes | 5 | 1 | |
| HRGMv2_0242_CGC17 | CGCFAM_05782 | Yes | 4 | 1 | |
| HRGMv2_0242_CGC18 | CGCFAM_08001 | Yes | 5 | 1 | |
| HRGMv2_0242_CGC24 | CGCFAM_09446 | Yes | 6 | 2 | |
| HRGMv2_0242_CGC25 | CGCFAM_09447 | Yes | 4 | 1 |
Top CAZyme Families