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Cluster: HRGMv2_0242_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0242_34 HRGMv2_0242_34_42 53031 55307 - GH3
CAZyme HRGMv2_0242_34 HRGMv2_0242_34_43 55324 56403 - GH16_3
NULL(UNKNOWN) HRGMv2_0242_34 HRGMv2_0242_34_44 56419 58290 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0242_34 HRGMv2_0242_34_45 58313 59839 - SusD_RagB | SusD-like_3
TC HRGMv2_0242_34 HRGMv2_0242_34_46 59892 63011 - 1.B.14.6.1
CAZyme HRGMv2_0242_34 HRGMv2_0242_34_47 63065 65314 - GH3
NULL(UNKNOWN) HRGMv2_0242_34 HRGMv2_0242_34_48 66035 66235 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0242_34 HRGMv2_0242_34_49 66443 66919 + Arg_repressor
CAZyme HRGMv2_0242_34 HRGMv2_0242_34_50 66945 69023 - GH127
CAZyme HRGMv2_0242_34 HRGMv2_0242_34_51 69051 70961 - GH43_29 | GH43_34
CAZyme HRGMv2_0242_34 HRGMv2_0242_34_52 70978 72027 - GH43_19
CAZyme HRGMv2_0242_34 HRGMv2_0242_34_53 72274 74241 + GH97
NULL(UNKNOWN) HRGMv2_0242_34 HRGMv2_0242_34_54 74252 74578 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0242_34 HRGMv2_0242_34_55 74765 77137 - GH35
CAZyme HRGMv2_0242_34 HRGMv2_0242_34_56 77231 78793 - GH30_4
CAZyme HRGMv2_0242_34 HRGMv2_0242_34_57 78817 80574 - GH30_4
sulfatase HRGMv2_0242_34 HRGMv2_0242_34_58 80836 82452 - S1_27
TC HRGMv2_0242_34 HRGMv2_0242_34_59 82502 85519 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_0242_34 HRGMv2_0242_34_60 85556 87019 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0242_34 HRGMv2_0242_34_61 87345 91259 - HTH_AraC
CAZyme HRGMv2_0242_34 HRGMv2_0242_34_62 91546 92523 - GH43_19
Gene ID: HRGMv2_0242_34_42
Type: CAZyme
Location: 53031 - 55307 (-)
Gene ID: HRGMv2_0242_34_43
Type: CAZyme
Location: 55324 - 56403 (-)
Gene ID: HRGMv2_0242_34_44
Type:
Location: 56419 - 58290 (-)
Gene ID: HRGMv2_0242_34_45
Type: pfam
Location: 58313 - 59839 (-)
Gene ID: HRGMv2_0242_34_46
Type: TC
Location: 59892 - 63011 (-)
Gene ID: HRGMv2_0242_34_47
Type: CAZyme
Location: 63065 - 65314 (-)
Gene ID: HRGMv2_0242_34_48
Type:
Location: 66035 - 66235 (+)
Gene ID: HRGMv2_0242_34_49
Type: TF
Location: 66443 - 66919 (+)
Gene ID: HRGMv2_0242_34_50
Type: CAZyme
Location: 66945 - 69023 (-)
Gene ID: HRGMv2_0242_34_51
Type: CAZyme
Location: 69051 - 70961 (-)
Gene ID: HRGMv2_0242_34_52
Type: CAZyme
Location: 70978 - 72027 (-)
Gene ID: HRGMv2_0242_34_53
Type: CAZyme
Location: 72274 - 74241 (+)
Gene ID: HRGMv2_0242_34_54
Type:
Location: 74252 - 74578 (-)
Gene ID: HRGMv2_0242_34_55
Type: CAZyme
Location: 74765 - 77137 (-)
Gene ID: HRGMv2_0242_34_56
Type: CAZyme
Location: 77231 - 78793 (-)
Gene ID: HRGMv2_0242_34_57
Type: CAZyme
Location: 78817 - 80574 (-)
Gene ID: HRGMv2_0242_34_58
Type: sulfatase
Location: 80836 - 82452 (-)
Gene ID: HRGMv2_0242_34_59
Type: TC
Location: 82502 - 85519 (-)
Gene ID: HRGMv2_0242_34_60
Type:
Location: 85556 - 87019 (-)
Gene ID: HRGMv2_0242_34_61
Type: TF
Location: 87345 - 91259 (-)
Gene ID: HRGMv2_0242_34_62
Type: CAZyme
Location: 91546 - 92523 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0242_34_45 vegetarian > vegan 1.92417 0.03004
HRGMv2_0242_34_56 vegetarian > omnivore 4.13670 0.02445
HRGMv2_0242_34_58 vegetarian > omnivore 4.67767 0.02445
HRGMv2_0242_34_59 vegetarian > omnivore 4.91885 0.02445

🧭 Explore Read Mapping of CGC

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