Genome Details
Selected Rep_genome_ID: HRGMv2_0168
Total Genomes Found: 7
Total Genomes Found: 7
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes communis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| C83.bin_7 | 3,037,580 | 100% | 0.48% | China(Inner Mongolia) | Asia | IMGG |
| GH100_bin.19 | 2,619,914 | 100% | 0.05% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_0168 | 2,632,099 | 100% | 0% | UK | Europe | HRGM |
| Rep_610 | 3,232,751 | 100% | 0.480769% | NA | NA | WIS |
| SPMP04_bin.100 | 2,423,314 | 94.31% | 0.75% | Singapore | Asia | SPMP |
| SPMP06_bin.30 | 2,670,093 | 94.89% | 0% | Singapore | Asia | SPMP |
| SPMP28_bin.53 | 2,897,063 | 95.99% | 1.68% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0168_CGC5 | CGCFAM_00077 | Yes | 6 | 1 | |
| HRGMv2_0168_CGC16 | CGCFAM_01494 | Yes | 10 | 5 | |
| HRGMv2_0168_CGC9 | CGCFAM_02026 | Yes | 6 | 1 | |
| HRGMv2_0168_CGC11 | CGCFAM_05352 | Yes | 8 | 3 | |
| HRGMv2_0168_CGC4 | CGCFAM_07652 | Yes | 4 | 1 | |
| HRGMv2_0168_CGC8 | CGCFAM_08147 | Yes | 7 | 4 |
Top CAZyme Families