Cluster: HRGMv2_0168_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0168
- CGC Family ID: CGCFAM_02026
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0168_7 | HRGMv2_0168_7_81 | 105930 | 110840 | + | 2.A.16.2.2 |
| TF | HRGMv2_0168_7 | HRGMv2_0168_7_82 | 111869 | 112420 | + | GerE |
| STP | HRGMv2_0168_7 | HRGMv2_0168_7_83 | 112540 | 113529 | + | FecR |
| TC | HRGMv2_0168_7 | HRGMv2_0168_7_84 | 113661 | 116993 | + | 1.B.14.6.1 |
| TC | HRGMv2_0168_7 | HRGMv2_0168_7_85 | 117019 | 118590 | + | 8.A.46.1.3 |
| CAZyme | HRGMv2_0168_7 | HRGMv2_0168_7_86 | 118593 | 120428 | + | GH20 |
Gene ID: HRGMv2_0168_7_81
Type: TC
Location: 105930 - 110840 (+)
Type: TC
Location: 105930 - 110840 (+)
Gene ID: HRGMv2_0168_7_82
Type: TF
Location: 111869 - 112420 (+)
Type: TF
Location: 111869 - 112420 (+)
Gene ID: HRGMv2_0168_7_83
Type: STP
Location: 112540 - 113529 (+)
Type: STP
Location: 112540 - 113529 (+)
Gene ID: HRGMv2_0168_7_84
Type: TC
Location: 113661 - 116993 (+)
Type: TC
Location: 113661 - 116993 (+)
Gene ID: HRGMv2_0168_7_85
Type: TC
Location: 117019 - 118590 (+)
Type: TC
Location: 117019 - 118590 (+)
Gene ID: HRGMv2_0168_7_86
Type: CAZyme
Location: 118593 - 120428 (+)
Type: CAZyme
Location: 118593 - 120428 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes communis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0168_7_81 | vegetarian > vegan | 1.03535 | 0.00455 |