Genome Details
Selected Rep_genome_ID: HRGMv2_0107
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Alloscardovia
Species
Alloscardovia omnicolens
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_0107 | 1,734,107 | 99.84% | 0.151% | Japan | Asia | HRGM |
| MGYG000003120 | 1,680,436 | 99.48% | 0.55% | United States | North America | UHGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0107_CGC26 | CGCFAM_00214 | Yes | 4 | 1 | alpha-glucan |
| HRGMv2_0107_CGC1 | CGCFAM_00233 | Yes | 4 | 1 | |
| HRGMv2_0107_CGC6 | CGCFAM_00533 | Yes | 5 | 1 | |
| HRGMv2_0107_CGC19 | CGCFAM_00970 | Yes | 6 | 4 | |
| HRGMv2_0107_CGC12 | CGCFAM_01882 | Yes | 4 | 1 | |
| HRGMv2_0107_CGC25 | CGCFAM_02456 | Yes | 4 | 1 | |
| HRGMv2_0107_CGC27 | CGCFAM_02914 | Yes | 9 | 1 | fructan |
| HRGMv2_0107_CGC18 | CGCFAM_02947 | Yes | 4 | 1 | xylan |
| HRGMv2_0107_CGC22 | CGCFAM_04890 | Yes | 6 | 1 | |
| HRGMv2_0107_CGC15 | CGCFAM_04904 | Yes | 5 | 1 | |
| HRGMv2_0107_CGC9 | CGCFAM_04919 | Yes | 3 | 1 | |
| HRGMv2_0107_CGC14 | CGCFAM_05019 | Yes | 3 | 2 | |
| HRGMv2_0107_CGC8 | CGCFAM_08395 | Yes | 7 | 1 |
Top CAZyme Families