Cluster: HRGMv2_0107_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0107
- CGC Family ID: CGCFAM_00970
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0107_8 | HRGMv2_0107_8_25 | 29473 | 32073 | + | CBM67 | GH78 |
| TC | HRGMv2_0107_8 | HRGMv2_0107_8_26 | 32074 | 33735 | + | 2.A.2.3.3 |
| CAZyme | HRGMv2_0107_8 | HRGMv2_0107_8_27 | 33793 | 36876 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_0107_8 | HRGMv2_0107_8_28 | 36878 | 37330 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0107_8 | HRGMv2_0107_8_29 | 37416 | 39875 | + | GH2 |
| CAZyme | HRGMv2_0107_8 | HRGMv2_0107_8_30 | 40393 | 41769 | + | GH1 |
Gene ID: HRGMv2_0107_8_25
Type: CAZyme
Location: 29473 - 32073 (+)
Type: CAZyme
Location: 29473 - 32073 (+)
Gene ID: HRGMv2_0107_8_26
Type: TC
Location: 32074 - 33735 (+)
Type: TC
Location: 32074 - 33735 (+)
Gene ID: HRGMv2_0107_8_27
Type: CAZyme
Location: 33793 - 36876 (+)
Type: CAZyme
Location: 33793 - 36876 (+)
Gene ID: HRGMv2_0107_8_28
Type:
Location: 36878 - 37330 (+)
Type:
Location: 36878 - 37330 (+)
Gene ID: HRGMv2_0107_8_29
Type: CAZyme
Location: 37416 - 39875 (+)
Type: CAZyme
Location: 37416 - 39875 (+)
Gene ID: HRGMv2_0107_8_30
Type: CAZyme
Location: 40393 - 41769 (+)
Type: CAZyme
Location: 40393 - 41769 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Alloscardovia
Species
Alloscardovia omnicolens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.