Cluster: HRGMv2_0107_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0107
- CGC Family ID: CGCFAM_00233
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0107_1 | HRGMv2_0107_1_6 | 4857 | 5804 | - | 2.A.28.2.6 |
| pfam | HRGMv2_0107_1 | HRGMv2_0107_1_7 | 5968 | 7341 | - | HATPase_c_5 |
| TF | HRGMv2_0107_1 | HRGMv2_0107_1_8 | 7341 | 8048 | - | LytTR |
| CAZyme | HRGMv2_0107_1 | HRGMv2_0107_1_9 | 8246 | 11155 | + | GH3 |
Gene ID: HRGMv2_0107_1_6
Type: TC
Location: 4857 - 5804 (-)
Type: TC
Location: 4857 - 5804 (-)
Gene ID: HRGMv2_0107_1_7
Type: pfam
Location: 5968 - 7341 (-)
Type: pfam
Location: 5968 - 7341 (-)
Gene ID: HRGMv2_0107_1_8
Type: TF
Location: 7341 - 8048 (-)
Type: TF
Location: 7341 - 8048 (-)
Gene ID: HRGMv2_0107_1_9
Type: CAZyme
Location: 8246 - 11155 (+)
Type: CAZyme
Location: 8246 - 11155 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Alloscardovia
Species
Alloscardovia omnicolens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.