Genome Details
Selected Rep_genome_ID: GH090_87
Total Genomes Found: 6
Total Genomes Found: 6
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Laedolimicola
Species
Laedolimicola sp900553635
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| A65.bin_29 | 2,855,007 | 94.3% | 1.34% | China(Inner Mongolia) | Asia | IMGG |
| CGMR089803 | 2,696,175 | 98.66% | 0% | China | Asia | CGMR |
| GH090_87 | 2,756,525 | 99.37% | 0.04% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_2327 | 2,601,734 | 97.15% | 0.019% | United Kingdom | Europe | HRGM |
| MGYG000001178 | 2,617,965 | 98.1% | 0.69% | Austria | Europe | UHGG |
| REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_MoBio_Fiber_A_5_1019.227 | 2,561,466 | 98.24% | 0.63% | NA | Africa | Hadza |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| GH090_87_CGC2 | CGCFAM_00006 | Yes | 6 | 2 | |
| GH090_87_CGC24 | CGCFAM_00010 | Yes | 10 | 1 | alpha-glucan |
| GH090_87_CGC10 | CGCFAM_00033 | Yes | 10 | 6 | |
| GH090_87_CGC15 | CGCFAM_00373 | Yes | 3 | 1 | |
| GH090_87_CGC14 | CGCFAM_00558 | Yes | 3 | 1 | |
| GH090_87_CGC16 | CGCFAM_03148 | Yes | 5 | 1 | |
| GH090_87_CGC13 | CGCFAM_05797 | Yes | 6 | 1 | |
| GH090_87_CGC18 | CGCFAM_05798 | Yes | 19 | 2 | |
| GH090_87_CGC23 | CGCFAM_05914 | Yes | 4 | 1 | |
| GH090_87_CGC17 | CGCFAM_07771 | Yes | 9 | 1 | |
| GH090_87_CGC3 | CGCFAM_09072 | Yes | 15 | 7 | |
| GH090_87_CGC25 | CGCFAM_09418 | Yes | 4 | 1 |
Top CAZyme Families