Cluster: GH090_87_CGC3
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: GH090_87
- CGC Family ID: CGCFAM_09072
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_15168 | k141_15168_50 | 44526 | 44789 | + | 4.A.2.1.19 |
| pfam | k141_15168 | k141_15168_51 | 44779 | 47490 | + | DUF2142 |
| NULL(UNKNOWN) | k141_15168 | k141_15168_52 | 47509 | 49035 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_15168 | k141_15168_53 | 49060 | 50073 | + | GT2 |
| CAZyme | k141_15168 | k141_15168_54 | 50066 | 51040 | + | GT2 |
| CAZyme | k141_15168 | k141_15168_55 | 51027 | 52097 | + | GT2 |
| pfam | k141_15168 | k141_15168_56 | 52576 | 53619 | + | ABC_sub_bind |
| TC | k141_15168 | k141_15168_57 | 53710 | 54633 | + | 3.A.1.34.1 |
| TC | k141_15168 | k141_15168_58 | 54633 | 55442 | + | 3.A.1.34.1 |
| pfam | k141_15168 | k141_15168_59 | 55523 | 58105 | - | YfhO |
| CAZyme | k141_15168 | k141_15168_60 | 58143 | 58883 | - | GT23 |
| pfam | k141_15168 | k141_15168_61 | 59064 | 62096 | + | GHMP_kinases_N | Fucose_pyrophosphorylase |
| CAZyme | k141_15168 | k141_15168_62 | 62249 | 63454 | + | GT4 |
| CAZyme | k141_15168 | k141_15168_63 | 63459 | 64205 | + | GT2 |
| CAZyme | k141_15168 | k141_15168_64 | 64286 | 64987 | + | GT2 |
Gene ID: k141_15168_50
Type: TC
Location: 44526 - 44789 (+)
Type: TC
Location: 44526 - 44789 (+)
Gene ID: k141_15168_51
Type: pfam
Location: 44779 - 47490 (+)
Type: pfam
Location: 44779 - 47490 (+)
Gene ID: k141_15168_52
Type:
Location: 47509 - 49035 (+)
Type:
Location: 47509 - 49035 (+)
Gene ID: k141_15168_53
Type: CAZyme
Location: 49060 - 50073 (+)
Type: CAZyme
Location: 49060 - 50073 (+)
Gene ID: k141_15168_54
Type: CAZyme
Location: 50066 - 51040 (+)
Type: CAZyme
Location: 50066 - 51040 (+)
Gene ID: k141_15168_55
Type: CAZyme
Location: 51027 - 52097 (+)
Type: CAZyme
Location: 51027 - 52097 (+)
Gene ID: k141_15168_56
Type: pfam
Location: 52576 - 53619 (+)
Type: pfam
Location: 52576 - 53619 (+)
Gene ID: k141_15168_57
Type: TC
Location: 53710 - 54633 (+)
Type: TC
Location: 53710 - 54633 (+)
Gene ID: k141_15168_58
Type: TC
Location: 54633 - 55442 (+)
Type: TC
Location: 54633 - 55442 (+)
Gene ID: k141_15168_59
Type: pfam
Location: 55523 - 58105 (-)
Type: pfam
Location: 55523 - 58105 (-)
Gene ID: k141_15168_60
Type: CAZyme
Location: 58143 - 58883 (-)
Type: CAZyme
Location: 58143 - 58883 (-)
Gene ID: k141_15168_61
Type: pfam
Location: 59064 - 62096 (+)
Type: pfam
Location: 59064 - 62096 (+)
Gene ID: k141_15168_62
Type: CAZyme
Location: 62249 - 63454 (+)
Type: CAZyme
Location: 62249 - 63454 (+)
Gene ID: k141_15168_63
Type: CAZyme
Location: 63459 - 64205 (+)
Type: CAZyme
Location: 63459 - 64205 (+)
Gene ID: k141_15168_64
Type: CAZyme
Location: 64286 - 64987 (+)
Type: CAZyme
Location: 64286 - 64987 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Laedolimicola
Species
Laedolimicola sp934373375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_15168_51 | vegetarian > vegan | 1.10541 | 0.00694 |
| k141_15168_51 | vegetarian > omnivore | 1.47830 | 0.00174 |
| k141_15168_53 | vegetarian > omnivore | 1.11463 | 0.00174 |
| k141_15168_53 | vegetarian > vegan | 1.19785 | 0.00694 |
| k141_15168_54 | vegetarian > omnivore | 1.06520 | 0.00174 |
| k141_15168_55 | vegetarian > omnivore | 2.05025 | 0.00174 |
| k141_15168_55 | vegetarian > vegan | 1.98168 | 0.00694 |
| k141_15168_59 | vegetarian > vegan | 1.30944 | 0.00694 |
| k141_15168_59 | vegetarian > omnivore | 1.64864 | 0.00174 |
| k141_15168_61 | vegetarian > vegan | 1.28527 | 0.00694 |
| k141_15168_61 | vegetarian > omnivore | 1.28113 | 0.00174 |
| k141_15168_62 | vegetarian > vegan | 1.04939 | 0.00694 |
| k141_15168_62 | vegetarian > omnivore | 1.47775 | 0.00174 |
| k141_15168_63 | vegetarian > vegan | 1.32837 | 0.00694 |
| k141_15168_64 | vegetarian > vegan | 1.05734 | 0.00694 |
| k141_15168_64 | vegetarian > omnivore | 1.33147 | 0.00174 |