Genome Details
Selected Rep_genome_ID: CGMR050004
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus parvulus
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR050004 | 2,032,350 | 99.38% | 1.17% | China | Asia | CGMR |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| CGMR050004_CGC18 | CGCFAM_00012 | Yes | 5 | 2 | host glycan/beta-glucan |
| CGMR050004_CGC13 | CGCFAM_00020 | Yes | 6 | 2 | host glycan/beta-glucan |
| CGMR050004_CGC7 | CGCFAM_00064 | Yes | 5 | 2 | |
| CGMR050004_CGC15 | CGCFAM_00243 | Yes | 14 | 2 | host glycan |
| CGMR050004_CGC6 | CGCFAM_00255 | Yes | 7 | 2 | |
| CGMR050004_CGC19 | CGCFAM_01076 | Yes | 4 | 1 | |
| CGMR050004_CGC12 | CGCFAM_01120 | Yes | 6 | 2 | |
| CGMR050004_CGC24 | CGCFAM_01863 | Yes | 6 | 1 | |
| CGMR050004_CGC17 | CGCFAM_05290 | Yes | 8 | 3 | |
| CGMR050004_CGC22 | CGCFAM_08654 | Yes | 8 | 1 |
Top CAZyme Families