Cluster: CGMR050004_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR050004
- CGC Family ID: CGCFAM_01120
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_14575 | k141_14575_54 | 47765 | 50428 | - | 3.A.3.2.28 |
| pfam | k141_14575 | k141_14575_55 | 50676 | 51497 | - | NAD_synthase |
| pfam | k141_14575 | k141_14575_56 | 51512 | 52984 | - | NAPRTase | NAPRTase_N | NAPRTase_C |
| CAZyme | k141_14575 | k141_14575_57 | 53100 | 53837 | + | GT26 |
| TF | k141_14575 | k141_14575_58 | 53894 | 54595 | - | GntR |
| CAZyme | k141_14575 | k141_14575_59 | 54659 | 55804 | - | CE9 |
Gene ID: k141_14575_54
Type: TC
Location: 47765 - 50428 (-)
Type: TC
Location: 47765 - 50428 (-)
Gene ID: k141_14575_55
Type: pfam
Location: 50676 - 51497 (-)
Type: pfam
Location: 50676 - 51497 (-)
Gene ID: k141_14575_56
Type: pfam
Location: 51512 - 52984 (-)
Type: pfam
Location: 51512 - 52984 (-)
Gene ID: k141_14575_57
Type: CAZyme
Location: 53100 - 53837 (+)
Type: CAZyme
Location: 53100 - 53837 (+)
Gene ID: k141_14575_58
Type: TF
Location: 53894 - 54595 (-)
Type: TF
Location: 53894 - 54595 (-)
Gene ID: k141_14575_59
Type: CAZyme
Location: 54659 - 55804 (-)
Type: CAZyme
Location: 54659 - 55804 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus parvulus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.