Cluster: CGMR050004_CGC15
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: CGMR050004
- CGC Family ID: CGCFAM_00243
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_130971 | k141_130971_15 | 9472 | 10884 | + | 4.A.5.1.6 |
| NULL(UNKNOWN) | k141_130971 | k141_130971_16 | 10935 | 11117 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_130971 | k141_130971_17 | 11208 | 12947 | - | GH78 |
| NULL(UNKNOWN) | k141_130971 | k141_130971_18 | 13128 | 13241 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | k141_130971 | k141_130971_19 | 13335 | 13685 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_130971 | k141_130971_20 | 13849 | 15810 | - | 4.A.2.1.8 |
| STP | k141_130971 | k141_130971_21 | 15814 | 16752 | - | PfkB |
| TF | k141_130971 | k141_130971_22 | 16874 | 17635 | + | HTH_6 |
| CAZyme | k141_130971 | k141_130971_23 | 17716 | 18864 | - | CE9 |
| STP | k141_130971 | k141_130971_24 | 18876 | 20048 | - | SIS | SIS |
| TF | k141_130971 | k141_130971_25 | 20089 | 20832 | - | GntR |
| TC | k141_130971 | k141_130971_26 | 21001 | 21837 | - | 4.A.6.1.18 |
| TC | k141_130971 | k141_130971_27 | 21821 | 22735 | - | 4.A.6.1.18 |
| TC | k141_130971 | k141_130971_28 | 22750 | 23244 | - | 4.A.6.1.18 |
Gene ID: k141_130971_15
Type: TC
Location: 9472 - 10884 (+)
Type: TC
Location: 9472 - 10884 (+)
Gene ID: k141_130971_16
Type:
Location: 10935 - 11117 (+)
Type:
Location: 10935 - 11117 (+)
Gene ID: k141_130971_17
Type: CAZyme
Location: 11208 - 12947 (-)
Type: CAZyme
Location: 11208 - 12947 (-)
Gene ID: k141_130971_18
Type:
Location: 13128 - 13241 (-)
Type:
Location: 13128 - 13241 (-)
Gene ID: k141_130971_19
Type:
Location: 13335 - 13685 (-)
Type:
Location: 13335 - 13685 (-)
Gene ID: k141_130971_20
Type: TC
Location: 13849 - 15810 (-)
Type: TC
Location: 13849 - 15810 (-)
Gene ID: k141_130971_21
Type: STP
Location: 15814 - 16752 (-)
Type: STP
Location: 15814 - 16752 (-)
Gene ID: k141_130971_22
Type: TF
Location: 16874 - 17635 (+)
Type: TF
Location: 16874 - 17635 (+)
Gene ID: k141_130971_23
Type: CAZyme
Location: 17716 - 18864 (-)
Type: CAZyme
Location: 17716 - 18864 (-)
Gene ID: k141_130971_24
Type: STP
Location: 18876 - 20048 (-)
Type: STP
Location: 18876 - 20048 (-)
Gene ID: k141_130971_25
Type: TF
Location: 20089 - 20832 (-)
Type: TF
Location: 20089 - 20832 (-)
Gene ID: k141_130971_26
Type: TC
Location: 21001 - 21837 (-)
Type: TC
Location: 21001 - 21837 (-)
Gene ID: k141_130971_27
Type: TC
Location: 21821 - 22735 (-)
Type: TC
Location: 21821 - 22735 (-)
Gene ID: k141_130971_28
Type: TC
Location: 22750 - 23244 (-)
Type: TC
Location: 22750 - 23244 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus parvulus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.